Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,685,761 – 3,685,865 |
Length | 104 |
Max. P | 0.597645 |
Location | 3,685,761 – 3,685,865 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -19.26 |
Consensus MFE | -11.43 |
Energy contribution | -11.93 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.06 |
Mean z-score | -2.19 |
Structure conservation index | 0.59 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3685761 104 - 22407834 UACCGAAGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCGUUUUGUCAUCAAGCUG------------CGACAAAAACAACUGCCAGAAAAAA-AAUAAAGGAGAAGU--- ..((...................((((...)))).(((((..(((((((.((((....)))).))------------)))))........))))).......-......))......--- ( -19.10) >DroPse_CAF1 173363 111 - 1 UACAAAGGAAUUAGACAAACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAAACAGCGAC------AGCGACAAAAACAACUGCCAGGAAAA---AUAAAGAAACGACGGA ...............................(((.(((((..((((((....((((((......)))))------)))))))........))))).)))..---................ ( -21.00) >DroEre_CAF1 153272 104 - 1 UACAGAGGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGCCAUCAAGCUG------------CGACAAAAACAACUGCCAGCAAAAA-AAUAAAGCAAAAGU--- ...............................(((((((((((........)))))))))))((((------------.(.((........))))))).....-..............--- ( -20.60) >DroYak_CAF1 158632 105 - 1 UACAGAGGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGUCAUCAAGCUG------------CGACAAAAACAACUGGCAGGAAAAAAAGUAAAGGAAAAGU--- (((............................(((((((((((........))))))))))).(((------------(..............))))........)))..........--- ( -17.24) >DroAna_CAF1 164209 96 - 1 UACAAAGGAAUUAGACAAACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCAUCAAGCAG------------CGACAAAAACAACUGCCAGGAAAAA-AAUGUC----------- ...............................(((.(((((..((((((..((((....))))..)------------)))))........))))).)))...-......----------- ( -15.90) >DroPer_CAF1 173375 117 - 1 UACAAAGGAAUUAGACAAACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAAACAGCGACAGCGACAGCGACAAAAACAACUGCCAGGAAAA---AUAAAGAAACGACGGA ...............................(((.(((((..((((((...(((((((......))))))).....))))))........))))).)))..---................ ( -21.70) >consensus UACAAAGGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGUCAUCAAGCAG____________CGACAAAAACAACUGCCAGGAAAAA_AAUAAAGAAAAAGU___ ...............................(((.(((((..(((....(((((((......................))))))))))..))))).)))..................... (-11.43 = -11.93 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:18 2006