Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,685,173 – 3,685,274 |
Length | 101 |
Max. P | 0.791969 |
Location | 3,685,173 – 3,685,274 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.98 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -17.23 |
Energy contribution | -17.11 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.12 |
Structure conservation index | 0.76 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3685173 101 - 22407834 AACGAGUUUUUCGCCCAGUGCAUUUAUGCUACAGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGAUUUUCCCGACUCA ...(((......((.....))......(((((((....)))))))...............)))(((.....)))......-..(((((......)))))... ( -22.00) >DroSec_CAF1 147559 101 - 1 AACGAGUUUUUCGUCCAGUGUAUUUAUGCCAUAGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGAUUUUCCCGACUCA ...(((((....((((((((.......(((((((....)))))))..................(((.....)))......-.))))))))......))))). ( -24.70) >DroSim_CAF1 156633 101 - 1 AAAGAGUUUUUUGCCCAGUGUACUUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGGUUUUCCCGACUCA ((((((.....(((((((.((.............))..))).)))).....))))))......(((.....)))......-..((((((....))))))... ( -23.62) >DroEre_CAF1 152545 101 - 1 AACGAGUU-UUCGCCCAGUGUAGGUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUCCCCGUUGGAUUUUCCCGACUCA ...(((..-..(((((((.((.((....))....))..))).)))).....))).........(((.....))).........(((((......)))))... ( -22.40) >DroYak_CAF1 158011 100 - 1 AACGAGUU-UUCGCGCAGUGUAUGUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGAUUUUCCCGACUCA ...(((..-...(((((.....)))..(((((.(....).)))))))....))).........(((.....)))......-..(((((......)))))... ( -20.20) >consensus AACGAGUUUUUCGCCCAGUGUAUUUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC_CCGUUGGAUUUUCCCGACUCA ...(((.....(((((((....................))).)))).....))).........(((.....))).........(((((......)))))... (-17.23 = -17.11 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:16 2006