Locus 1382

Sequence ID 2L_DroMel_CAF1
Location 3,684,570 – 3,684,665
Length 95
Max. P 0.663968
window2257

overview

Window 7

Location 3,684,570 – 3,684,665
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 74.01
Mean single sequence MFE -28.60
Consensus MFE -17.73
Energy contribution -17.95
Covariance contribution 0.22
Combinations/Pair 1.28
Mean z-score -1.31
Structure conservation index 0.62
SVM decision value 0.27
SVM RNA-class probability 0.663968
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3684570 95 + 22407834
GGCUGCCGCUUUUGGAAGCCACAUCUUUGGCAACUUUGGAGGUGGCAGCAAUGCCAGCGAUAGGUGAGUCGAUUUACUAAAUGCAUAUU-------AUUAUA
.(((((((((((..((.((((......))))...))..))))))))))).......(((.(.((((((....)))))).).))).....-------...... ( -33.50)
>DroGri_CAF1 184929 90 + 1
-GCCGCAGCCUUUGGUAGUCACAUUUUUGGCAGUUUUGGUGCCGGCAGCGUUGCCAACGAUAGGUAAGUUGUAAG-----AUCUCUAUUAUUAA------UA
-((((..(((...((..((((......))))..))..)))..))))(((.(((((.......)))))))).....-----..............------.. ( -19.20)
>DroSec_CAF1 146950 102 + 1
GGCGGCCGCUUUUGGAAGCCACAUCUUUGGAAACUUUGGAGGUGGCAGCAAUGCCAGCGAUAGGUGAGUCGACUUACUAAAUGCAUAUUUUUGGGUAUUAUA
.((.((((((((..((..(((......)))....))..)))))))).))((((((.(((.(.((((((....)))))).).))).((....))))))))... ( -32.90)
>DroSim_CAF1 156024 102 + 1
GGCGGCCGCUUUUGGAAGCCACAUUUUUGGAAACUUUGGAGGUGGCAGCAAUGCCAGCGAUAGGUGAGUCGACUUACUAAAUGCAUAUUUUUGGGUAUUAUA
.((.((((((((..((..(((......)))....))..)))))))).))((((((.(((.(.((((((....)))))).).))).((....))))))))... ( -32.90)
>DroEre_CAF1 151982 96 + 1
GGCGGCCGCUUUUGGAAGCCACAUCUUCGGAAACUUUGGAGGUG---GCAACGCCAGCGACAGGUGAGUCGGUUUACUAAAUGUAUAUUUUCGGGUAUA---
((((((((((((..((..((........))....))..))))))---))..))))..((((......))))............((((((....))))))--- ( -28.30)
>DroAna_CAF1 163248 87 + 1
GGCCGCCGCCUUUGGAAGUCAUAUUUUCGGAAACUUUGGAGCCGGCAGCAGUGCCUCCGAUAGGUGAGUCCAG-----AAAUCUCUAUA------AAU----
(((....)))((((((..((((....(((((......(....)((((....)))))))))...)))).)))))-----)..........------...---- ( -24.80)
>consensus
GGCGGCCGCUUUUGGAAGCCACAUCUUUGGAAACUUUGGAGGUGGCAGCAAUGCCAGCGAUAGGUGAGUCGACUUACUAAAUGCAUAUUUUUGG_UAUU_UA
.((.((((((((..((..((........))....))..)))))))).))..((((.......)))).................................... (-17.73 = -17.95 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:11 2006