Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,677,546 – 3,677,646 |
Length | 100 |
Max. P | 0.771137 |
Location | 3,677,546 – 3,677,646 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -24.58 |
Consensus MFE | -20.82 |
Energy contribution | -21.23 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.03 |
Mean z-score | -1.90 |
Structure conservation index | 0.85 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3677546 100 - 22407834 UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACGAAAUAUUUUAUAACUGCCUUUUGA .....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. ( -22.90) >DroVir_CAF1 184317 99 - 1 UUGCUGAAAGGCAGCUGUUGCCAA-AAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA .....((((((((((((((((.((-((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)))))))).. ( -29.90) >DroGri_CAF1 171476 99 - 1 UUGCUGAAAGGCAGCUGUUGCCAA-AAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA .....((((((((((((((((.((-((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)))))))).. ( -29.90) >DroSim_CAF1 146342 100 - 1 UUGCGGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAUUUUUCUAGCAGCACCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA ..((((...((..(((((((((..........))).....((....)).))))))...)).((((((((...)))))))).........))))....... ( -19.00) >DroEre_CAF1 144912 100 - 1 UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACGAAAUAUUUUAUAACUGCCUUUUGA .....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. ( -22.90) >DroYak_CAF1 150131 100 - 1 UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACGAAAUAUUUUAUAACUGCCUUUUGA .....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. ( -22.90) >consensus UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA .....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. (-20.82 = -21.23 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:09 2006