Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 427,902 – 427,996 |
Length | 94 |
Max. P | 0.734868 |
Location | 427,902 – 427,996 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -13.89 |
Energy contribution | -14.93 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.27 |
Structure conservation index | 0.54 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 427902 94 - 22407834 GUCGCAGAU--------GUAUCUUAAAGAUACAAAUUCUGUACGCUGG---GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AGCAGCAGCAACAA ((.((((((--------(((((.....))))))...)))))))((((.---((.....((((((((........))).....)))))....-------.))..))))..... ( -24.70) >DroSec_CAF1 5392 94 - 1 GUGGCAGAU--------GUAUCUUAAAGAUACAAAUUCUGUACGCUGC---ACGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AGCAGCAGCAACAA (((.(((((--------(((((.....))))))...)))))))(((((---..((...((((((((........)))........))))).-------.)).)))))..... ( -25.10) >DroSim_CAF1 4382 94 - 1 GUCGCAGAU--------GUAUCUUAAAGAUACAAAUUCUGUACGCUGC---GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AGCAGCAGCAACAA ((.((((((--------(((((.....))))))...)))))))(((((---((.....((((((((........))).....)))))....-------.)).)))))..... ( -27.50) >DroEre_CAF1 5040 87 - 1 GGCGCAGAU--------GUAUCUUGGAGAUACAAAUUCUGUACGCUGC---GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAACAACAACA-------------- .((((((.(--------((((...(((........))).)))))))))---)).....((((((((........)))..)))))..............-------------- ( -20.50) >DroAna_CAF1 5336 105 - 1 GCAGCAGAUGUAUGUAUGUAUCUUUCAGAUACAAAUUCUGUACGCUGAGGAGCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AUCAGCAGCACCAC ((.((.((((.(((..((((((.....))))))..........((((((((..((((.....))))..))))))))...........))))-------))).)).))..... ( -30.30) >consensus GUCGCAGAU________GUAUCUUAAAGAUACAAAUUCUGUACGCUGC___GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC_______AGCAGCAGCAACAA ...(((((.........(((((.....)))))....)))))..(((((..........((((((((........))).....)))))............)))))........ (-13.89 = -14.93 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:11 2006