Locus 1379

Sequence ID 2L_DroMel_CAF1
Location 3,674,162 – 3,674,257
Length 95
Max. P 0.822747
window2254

overview

Window 4

Location 3,674,162 – 3,674,257
Length 95
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 83.99
Mean single sequence MFE -33.02
Consensus MFE -25.14
Energy contribution -25.64
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.76
SVM decision value 0.69
SVM RNA-class probability 0.822747
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3674162 95 - 22407834
UUAUAGUUAUAUGGCAGUGGAGGUGC-------U-CUGCCUCGGGUUCCUCUCCGGUUCUGGAUA-------CUGGUUCCUCGAUUCUGGAGUGCCAGCCAAAGUUUAUU
...........((((....(((((..-------.-..))))).(((....((((((.((.(((..-------.....)))..))..)))))).))).))))......... ( -29.60)
>DroSec_CAF1 136533 89 - 1
UUAUAGUUAUAUGGCAGUGGAGGUGC---------CUGCCUCUGGUC---CUCCGGUUCUGGAUU-------CCGGUUCCUCGAUUCUGGAGUGCCAGCCAAAGUUGA--
...........((((...((((((..---------..))))))((..---((((((.((.(((..-------.....)))..))..))))))..)).)))).......-- ( -32.40)
>DroSim_CAF1 142690 94 - 1
UUAUAGUUAUAUGGCAGUGGAGGUGCUCG---CU-CUGCCUCUGGUC---CUCCGGUUCUGGAUU-------CCGGUUCCUCGAUUCUGGAGUGCCAGCCAAAGUUUA--
...........((((...((((((.....---..-..))))))((..---((((((.((.(((..-------.....)))..))..))))))..)).)))).......-- ( -31.60)
>DroYak_CAF1 146554 107 - 1
UUAUAGUUAUAUGGCAGUGGAGGGACGAGGAACUCCUGCCUCUGGUA---CUCCGGUUCUGGAUUCUGGAUUCUGGUUCCUCGACUCUGGAGUGCCAGCCAAAGUUUAUU
...........((((...(((((.(.(((...))).).)))))((((---((((((.((.(((..(..(...)..).)))..))..)))))))))).))))......... ( -38.50)
>consensus
UUAUAGUUAUAUGGCAGUGGAGGUGC_______U_CUGCCUCUGGUC___CUCCGGUUCUGGAUU_______CCGGUUCCUCGAUUCUGGAGUGCCAGCCAAAGUUUA__
...........((((...((((((.............))))))(((....((((((.((.(((..............)))..))..)))))).))).))))......... (-25.14 = -25.64 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:05 2006