Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,674,019 – 3,674,111 |
Length | 92 |
Max. P | 0.660846 |
Location | 3,674,019 – 3,674,111 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 73.02 |
Mean single sequence MFE | -35.57 |
Consensus MFE | -11.23 |
Energy contribution | -11.45 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.33 |
Mean z-score | -2.16 |
Structure conservation index | 0.32 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3674019 92 - 22407834 UGGGA--CUGGGAGUAGGGAAUCAUUCUGGAUGA------CGAGCG----GU--GGGCAGUAGGAAAUCGAAUUGCCCCGCUGUGGGUUUUCUUUGCACCCAAUUC ..(((--.((((.((((((((((......)))((------(..(((----((--(((((((..(....)..)))).))))))))..))).))))))).)))).))) ( -31.90) >DroPse_CAF1 160205 104 - 1 CUCCAUUCUGAGAGGAG-CAGUCACAGGGGGAGC-GGGGAGGAGAGCCCCGCCCUAGCAAUAGGAAAUCAAAUUGCUCCUCUGUGGCUUUUCUUUACACGAAACUC .....(((((.((((((-.((((((((((((.((-((((.......))))))((((....))))............)))))))))))).)))))).)).))).... ( -44.50) >DroSec_CAF1 136403 91 - 1 UGUGA--CUGGGAGUAGGGAAUCAUUCUGGGUGA------CGAGCG-----U--GGGCAGUGGGAAAUCGAAUUGCCCCGCUGUGGGUUUUCUUUGCACCCAAUUC .....--.((((.((((((((..((((..(....------).((((-----.--(((((((..(....)..)))))))))))..)))).)))))))).)))).... ( -34.90) >DroEre_CAF1 141211 98 - 1 UGGGA--CAGGGAGCAUGGAAUCAUUCUGGGUGACGGCGACGAGUG----GU--GGGCAAUAGGAAAUCCAAUUGAACCGCUGUGGGUUUUCUUUGCACCCAAUUC .....--..(((.(((.((((........(....)..(.((.((((----((--...((((.((....)).)))).)))))))).)...)))).))).)))..... ( -30.60) >DroYak_CAF1 146402 92 - 1 UGGAA--CUGGGAGUGCGGAAUCAUUCUGGGUGA------CGAGUG----GU--GGGCAAUAGGAAAUCCAAUUGCCCCGCUGUGGGUUUUCUUUGCACGCAAUUC .(..(--((.((((((......)))))).)))..------)((((.----((--(.((((.((((((((((...((...))..)))))))))))))).))).)))) ( -33.10) >DroPer_CAF1 160191 104 - 1 CUCCAUUCUGAGAGGAG-CAGUCACAGGGGGAGC-GGAGAGGAGAGCCCCGCCCUAGCAAUAGGAAAUCAAAUUGCUCCUCUGUGGCUUUUCUUUACACGAAACUC .....(((((.((((((-.(((((((((((.(((-((...((......))..((((....))))........)))))))))))))))).)))))).)).))).... ( -38.40) >consensus UGGGA__CUGGGAGUAGGGAAUCAUUCUGGGUGA______CGAGAG____GU__GGGCAAUAGGAAAUCAAAUUGCCCCGCUGUGGGUUUUCUUUGCACCCAAUUC .............((((((((((((.................((((........(((((((..(....)..)))))))))))))))...))))))))......... (-11.23 = -11.45 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:04 2006