Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,670,381 – 3,670,487 |
Length | 106 |
Max. P | 0.723081 |
Location | 3,670,381 – 3,670,487 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 65.99 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -4.96 |
Energy contribution | -6.27 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.28 |
Mean z-score | -2.41 |
Structure conservation index | 0.20 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.723081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3670381 106 + 22407834 AUUCCUGCACAUUGCUGUUUGAAAUAAAAUUUACCAUCAGUUAA-----------UA--AUGGAUAAUAAUAGUGUUUUGCUAACUACUUACGAUCUUUUUUCCCGUGAGCUAGUGCAA- .....(((((......(((.((((((....(((((((.......-----------..--)))).)))......))))))...)))..((((((...........))))))...))))).- ( -16.50) >DroSec_CAF1 132815 102 + 1 AUUCCUGCACAUUGCUGUUUGAAAGA-AAUUUAGCAGCAGUUAA-----------UA--AUGGUCA---AUGGUGGUUUACUAACUACUCACGAUCUUUUUGCCCUUGGGCAAGUGCAA- .....(((((((((((((...(((..-..))).))))))))...-----------..--..((((.---..(((((((....)))))))...))))...(((((....)))))))))).- ( -34.50) >DroSim_CAF1 138907 102 + 1 AUUCUUGCACAUUGCUGUUUGAAAGA-AAUUUAACAGCAGUUAA-----------UA--AUGGUCA---ACAGUGGUUUACUAACUACUUACGAUCUUUUUGCCCGUGAGCAAGUGCAA- .....((((((((((((((..(((..-..))))))))))))...-----------..--..((((.---..(((((((....)))))))...))))...((((......))))))))).- ( -29.40) >DroEre_CAF1 137602 91 + 1 ACU-UUGCACUUUGCUGUUCGAAAGA-AAUGUAUCAC----------------------UCAGUCA---AGAGUGAUUUCAUU-CUACUUACGAUCUCUUUUUCCCUGAACAAGUGCCA- ...-..(((((....((((((..(((-(.((.(((((----------------------((.....---.)))))))..))))-))......((........))..)))))))))))..- ( -21.50) >DroYak_CAF1 142518 102 + 1 UUUCUUGCACUUUGCUGUUUUAAAGA-AAUUUACCAAAAAUUAA-----------UA--ACAGUGA---GCAGUGGUUUCAUAACUACUUACGAUCAUUUUGUCCGUGAACAAGUGCAA- .....(((((((..(((((.((((..-..))))...........-----------.)--))))..)---...((((((....))))))(((((..(.....)..)))))...)))))).- ( -21.42) >DroAna_CAF1 148648 111 + 1 AUAACGACAGAUUGCUA-----GGGA-AAUUAAG---GAGUUAAAGGAGUAUAAAUAUUAUAAAUUAGUAUGGUAUUUUUUUAAUAACUUACGACUUUUUUGUGAGAAAGCAAGACCCAU .................-----(((.-...((((---..(((((((((((((..((((((.....)))))).)))))))))))))..))))......((((((......))))))))).. ( -23.40) >consensus AUUCCUGCACAUUGCUGUUUGAAAGA_AAUUUACCAGCAGUUAA___________UA__AUAGUCA___AUAGUGGUUUACUAACUACUUACGAUCUUUUUGCCCGUGAGCAAGUGCAA_ .....(((((.(((((.......................................................((((..........))))((((...........)))))))))))))).. ( -4.96 = -6.27 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:03 2006