Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,665,184 – 3,665,295 |
Length | 111 |
Max. P | 0.851057 |
Location | 3,665,184 – 3,665,295 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.96 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -17.57 |
Energy contribution | -17.90 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.84 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3665184 111 + 22407834 UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAGAGCAGCAAAA--------AAAUAUGCAAAAAAAAAAAGG ((.((((.(((....)))..((((.....))))........(((((.....(((.....)))..))))).........))))))(((...--------.....)))............. ( -22.20) >DroPse_CAF1 152331 95 + 1 UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAACCAGCAAA---------AAA------A-----AA---- ...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..)))))....................---------...------.-----..---- ( -18.90) >DroEre_CAF1 130133 104 + 1 UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAA-AACAAAAGCAGCAAA---------AAAUAUGCAA-----AAAAGG ...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..)))))....-.......(((.....---------.....)))..-----...... ( -20.90) >DroYak_CAF1 137118 114 + 1 UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAAAAUGUGGAAAAAUAUGGAA-----AAAAGG ...((((((((....)))..((..((((.((......))..(((((.....(((.....)))..)))))......................))))..))....)))))-----...... ( -24.80) >DroAna_CAF1 140991 91 + 1 UGACUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUCCGCUUAAUGCGCCCCGAGACAAAAA-AAAAGUCUCAAA---------A-----------------AG- ........((((((((....((((...........))))..)))))......((.....)))))..(((((.....-....)))))...---------.-----------------..- ( -20.40) >DroPer_CAF1 152159 94 + 1 UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAACCAGCAAA---------AA-------A-----AA---- ...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..)))))....................---------..-------.-----..---- ( -18.90) >consensus UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAA_________AAA______A_____AA_AG_ ...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..))))).................................................. (-17.57 = -17.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:59 2006