Locus 1374

Sequence ID 2L_DroMel_CAF1
Location 3,661,611 – 3,661,702
Length 91
Max. P 0.720874
window2246

overview

Window 6

Location 3,661,611 – 3,661,702
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 81.88
Mean single sequence MFE -15.71
Consensus MFE -11.49
Energy contribution -11.93
Covariance contribution 0.44
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.73
SVM decision value 0.40
SVM RNA-class probability 0.720874
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3661611 91 - 22407834
CCCCACC-CCCCCUUCUUGCCACAUGGCUCUUUGGCCACAAUUACG-AAAUGAAUUUGUGGCCUUCCGCAGUCCCUAUUCUUCCCCU-UUUAUG
.......-..........(((....))).....((((((((.....-........))))))))........................-...... ( -16.92)
>DroSec_CAF1 124031 91 - 1
CCCCAAC-CCCUGUUCUAGCCCCAUGACUCUUUGUCCACAAUUACG-AAAUGAAUUUGUGGCCUCCCGCAGUCCCUAUUCUUCCCCU-UUUAUG
.......-..((((....(((....(((.....))).......(((-((.....)))))))).....))))................-...... (  -9.60)
>DroSim_CAF1 130310 89 - 1
CCCUCCC-CCC---UCUUGCCCCUUGGCUCUUUGGCCACAAUUACAUAAAUGAAUUUGUGGCCUCCCGCAGUCCCUAUUCUUCCCCU-UUUAUG
.......-...---....(((....))).....((((((((...((....))...))))))))........................-...... ( -16.40)
>DroEre_CAF1 126456 88 - 1
---CCUC-CCCCCUUUUAGCCCCCUGGCUCUUUGGCCACAAUUACG-AAAUGAAUUUGUGGCCUCCCGCAGUCCCUAUUCUUCCCCC-CUCAUG
---....-.........((((....))))....((((((((.....-........))))))))........................-...... ( -16.62)
>DroYak_CAF1 133303 92 - 1
CCCCACU-CUCCCUUCUUGCCCCCUGGCUCUUUGGCCACAAUUACA-AAAUGAAUUUGUGGCCUCCCGCUGUCCCUAUUCUUCCCCCUCGAAUG
.......-.....(((..(((....))).....((((((((.....-........))))))))..........................))).. ( -16.32)
>DroAna_CAF1 135989 91 - 1
UCCCACUGCCCCGUCCCCGCCCCCUGGGUCGUUGGCCACAAUUACG-AAAUGAAUUUGUUGCCUCCUGCAGAACCUAUCCUGCCGCA-UGU-UG
....(((((..((.(((........))).))..(((.((((.....-........)))).)))....((((........)))).)))-.))-.. ( -18.42)
>consensus
CCCCACC_CCCCCUUCUUGCCCCCUGGCUCUUUGGCCACAAUUACG_AAAUGAAUUUGUGGCCUCCCGCAGUCCCUAUUCUUCCCCU_UUUAUG
..................(((....))).....((((((((...((....))...))))))))............................... (-11.49 = -11.93 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:58 2006