Locus 1373

Sequence ID 2L_DroMel_CAF1
Location 3,649,429 – 3,649,521
Length 92
Max. P 0.859028
window2245

overview

Window 5

Location 3,649,429 – 3,649,521
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 86.50
Mean single sequence MFE -24.53
Consensus MFE -18.29
Energy contribution -19.87
Covariance contribution 1.58
Combinations/Pair 1.14
Mean z-score -3.52
Structure conservation index 0.75
SVM decision value 0.82
SVM RNA-class probability 0.859028
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3649429 92 + 22407834
CACUGUUGCCUGGUUGGUUUGUUUGUUAAACUUUAUGACAA-AAUGCUAAAAAUAAACU---AGCAAACAAAGCGAAAAGUGAGCAGCAGUAACUG
.((((((((((..(((.(((((((((((...(((((.....-..........))))).)---)))))))))).)))..))...))))))))..... ( -26.56)
>DroSec_CAF1 117088 92 + 1
CACCGUUGCCUGGUUGGUUUGUUUGUUAAACUUUAUGACAA-AAUGCUAAAAAUAAACU---AGCAAACAAAGCGAAAAGUGAGCAGCAGUAACUG
.((.(((((((..(((.(((((((((((...(((((.....-..........))))).)---)))))))))).)))..))...))))).))..... ( -21.96)
>DroSim_CAF1 122807 92 + 1
CACCGUUGCCUGGUUGGUUUGUUUGUUAAACUUUAUGACAA-AAUGCUAAAAAUAAACU---AGCAAACAAAGCGAAAAGUGAGCAGCGGUAACUG
.((((((((((..(((.(((((((((((...(((((.....-..........))))).)---)))))))))).)))..))...))))))))..... ( -28.06)
>DroEre_CAF1 119411 92 + 1
CACUGUUGCCUGGUUCGUUUGUUUGUUAAACUUUAUGACAA-AAUGCUAAAAAUAAACU---AGCAAACAAAGCGAAAAUUGAGCAGCAGUAACCG
.(((((((((...(((((((((((((((...(((((.....-..........))))).)---))))))).)))))))....).))))))))..... ( -26.46)
>DroYak_CAF1 122530 92 + 1
CACUGUUGCCUGGUUGGUUUGUUUGUUAAACUUUAUGACAA-AAUGCUAAAAAUAAACU---AGCAAACAAAGCGAAAAUUGAGCGGCAGUAACUG
.(((((((((...(((.(((((((((((...(((((.....-..........))))).)---)))))))))).))).....).))))))))..... ( -24.66)
>DroPer_CAF1 137855 82 + 1
CACUGAUUGUUUGUUCAUUUGUUUGCUAAACUUUAUGACAAAAAUUCUAUAAAUAAAGUCGAAGCAAACAAAGCGAAAAAC--------------A
.......(((((.(((.((((((((((..(((((((................)))))))...))))))))))..)))))))--------------) ( -19.49)
>consensus
CACUGUUGCCUGGUUGGUUUGUUUGUUAAACUUUAUGACAA_AAUGCUAAAAAUAAACU___AGCAAACAAAGCGAAAAGUGAGCAGCAGUAACUG
.((((((((((..(((.((((((((((....(((((................))))).....)))))))))).)))..))...))))))))..... (-18.29 = -19.87 +   1.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:57 2006