Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,648,535 – 3,648,648 |
Length | 113 |
Max. P | 0.764135 |
Location | 3,648,535 – 3,648,648 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 86.54 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -20.06 |
Energy contribution | -19.74 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.28 |
Mean z-score | -2.55 |
Structure conservation index | 0.64 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3648535 113 - 22407834 GAAAAGUGGUUUCGGCGCACAGCUGUUUUGAAGGAACGAAAUGGAAGUAGAACGUUCAAAACGGAGACCUUAAGAGAAA--AAUGCUCUUAAGAUCGACAAAAGUCUCUUAGCUU .....(((((....)).)))((((((((((((.(.((.........))....).))))))))((((((((((((((...--....))))))))..........)))))).)))). ( -26.90) >DroSec_CAF1 116159 113 - 1 GAAAAGUGGUUUCGGCGCACAGCUGUUUUGAAGGAACGGAAUGGAAGUAGAACAUUCCAAUCGGAGACUUUAAGAGAAA--AAUGCUCUUAAGAUUGCCGAAAUUCUCUUAGCUU ...(((.(((((((((........((((.....))))((((((.........))))))(((((....).(((((((...--....))))))))))))))))))))..)))..... ( -31.30) >DroSim_CAF1 121885 113 - 1 GAAAAGUGGUUUCGACGCACAGCUGUUUUGAAGGAACGGAAUGGAAGUAGAACAUUCCAAUCGGAGACUUUAAGAGAAA--AAUGCUCUUAGGAUUGACGAAAUUCUCUUAGCUU .....(((((....)).)))(((((....(((.....((((((.........))))))..(((..((..(((((((...--....)))))))..))..)))..)))...))))). ( -27.70) >DroEre_CAF1 118449 115 - 1 AAAAAGAGGUUUCGGCGCUCAGCUGUUUUAAAGAAACGGAAUGGAAGUAGAACAUUCCGUUUGGAAACUUUAAGAGCAAGUCAUUCUCUUAAGAUUGCCGAAAAACUCUUAGCUU ...(((((.((((((((.((....(((((....((((((((((.........)))))))))).))))).(((((((.((....))))))))))).))))))))..)))))..... ( -38.50) >DroYak_CAF1 121592 115 - 1 AAAAAGAGGUUUUGGCGCUCAGCUGUUUUGAAGAAACAGAAUGGAAGUAGAACAUUCCGAUUGGAAACUUUAAGAGAAACGAAUUCUCUUAAGAUCAGCGAAAAACUCUUAGCUC ...(((((.((((.((......(((((((...)))))))...((((........))))(((((....).(((((((((.....))))))))))))).)).)))).)))))..... ( -31.20) >consensus GAAAAGUGGUUUCGGCGCACAGCUGUUUUGAAGGAACGGAAUGGAAGUAGAACAUUCCAAUCGGAGACUUUAAGAGAAA__AAUGCUCUUAAGAUUGACGAAAAUCUCUUAGCUU .....(((((....)).)))(((((............((((((.........))))))..(((..((.((((((((.........)))))))).))..)))........))))). (-20.06 = -19.74 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:56 2006