Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,640,448 – 3,640,554 |
Length | 106 |
Max. P | 0.843933 |
Location | 3,640,448 – 3,640,554 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.47 |
Mean single sequence MFE | -25.97 |
Consensus MFE | -19.45 |
Energy contribution | -19.70 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.76 |
Structure conservation index | 0.75 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3640448 106 + 22407834 AACGCAUCCAGGCGGCUUUCCUGAUCAACAGCCGCCACGGAAAACUCAAUCAGCCAGGCGUUGGGAGCCCUACA-AA----AAAAAAAUAAUACAACAAAAAUAGUGCAUA ...((((((.(((((((............)))))))..)))...(((...((((.....)))).))).......-..----........................)))... ( -22.90) >DroVir_CAF1 141591 101 + 1 AACGCAUCCAGGCGGCUUUCCAGAAGAACCGCCGCCACGUGGAAUUUGCUCAGUUCGUUAAACGCACACCUACACACAGAACGAGAG--------AGAG--AGAGAGCAAA ......((((((((((.(((.....)))..))))))...)))).(((((((.((.((.....)).))..............(....)--------....--...))))))) ( -27.00) >DroSec_CAF1 108140 98 + 1 AACGCAUCCAGGCGGCUUUCCUGAUCAACAGCCGCCACGGAAAACUCAAUCAGCCAGGCGUUGGGAGCCCUACA-AA----------AUAAUAAACCAA--AGAGUGCAUA ...((.(((.(((((((............)))))))..)))..((((.....((...))((.((....)).)).-..----------............--.))))))... ( -25.70) >DroSim_CAF1 113863 98 + 1 AACGCAUCCAGGCGGCUUUCCUGAUCAACAGCCGCCACGGAAAACUCAAUCAGCCAGGCGUUGGGAGCCCUACA-AA----------AUAAUAAACCAA--AGAGUGCAUA ...((.(((.(((((((............)))))))..)))..((((.....((...))((.((....)).)).-..----------............--.))))))... ( -25.70) >DroEre_CAF1 109987 98 + 1 AACGCAUCCAGGCGGCUUUCCUGAUCAACAGCCGCCACGGAAAACUCAAUCAGCCAGGCGUUGGGAGCCCUGCA-AA----------AUAGUAAACCAA--AGAGUGCAUA ...(((..(.(((((((............)))))))..((...(((......((..(((.......)))..)).-..----------..)))...))..--.)..)))... ( -26.90) >DroYak_CAF1 113362 100 + 1 AACGCAUCCAGGCGGCUUUCCUGAUCAACAGCCGCCACGGAAAACUCAAUCAGCCAGGCGUUGGGAGCCCUGCA-AA----------GUAAUAAACCAAAAAGAGUGCAUA ...((.(((.(((((((............)))))))..)))..((((.....((..(((.......)))..)).-..----------((.....))......))))))... ( -27.60) >consensus AACGCAUCCAGGCGGCUUUCCUGAUCAACAGCCGCCACGGAAAACUCAAUCAGCCAGGCGUUGGGAGCCCUACA_AA__________AUAAUAAACCAA__AGAGUGCAUA ...((((((.(((((((............)))))))..)))...............(((.......)))....................................)))... (-19.45 = -19.70 + 0.25)
Location | 3,640,448 – 3,640,554 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.47 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -24.82 |
Energy contribution | -25.35 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.12 |
Mean z-score | -1.09 |
Structure conservation index | 0.80 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3640448 106 - 22407834 UAUGCACUAUUUUUGUUGUAUUAUUUUUUU----UU-UGUAGGGCUCCCAACGCCUGGCUGAUUGAGUUUUCCGUGGCGGCUGUUGAUCAGGAAAGCCGCCUGGAUGCGUU .(((((...................(((..----((-.((.((((.......)))).)).))..)))...((((.(((((((............)))))))))))))))). ( -28.80) >DroVir_CAF1 141591 101 - 1 UUUGCUCUCU--CUCU--------CUCUCGUUCUGUGUGUAGGUGUGCGUUUAACGAACUGAGCAAAUUCCACGUGGCGGCGGUUCUUCUGGAAAGCCGCCUGGAUGCGUU (((((((...--....--------...(((((..(((..(....)..)))..)))))...))))))).((((...((((((..(((....)))..))))))))))...... ( -30.52) >DroSec_CAF1 108140 98 - 1 UAUGCACUCU--UUGGUUUAUUAU----------UU-UGUAGGGCUCCCAACGCCUGGCUGAUUGAGUUUUCCGUGGCGGCUGUUGAUCAGGAAAGCCGCCUGGAUGCGUU .((((((((.--(..((((((...----------..-.)))((((.......)))))))..)..))))..((((.(((((((............))))))))))).)))). ( -31.10) >DroSim_CAF1 113863 98 - 1 UAUGCACUCU--UUGGUUUAUUAU----------UU-UGUAGGGCUCCCAACGCCUGGCUGAUUGAGUUUUCCGUGGCGGCUGUUGAUCAGGAAAGCCGCCUGGAUGCGUU .((((((((.--(..((((((...----------..-.)))((((.......)))))))..)..))))..((((.(((((((............))))))))))).)))). ( -31.10) >DroEre_CAF1 109987 98 - 1 UAUGCACUCU--UUGGUUUACUAU----------UU-UGCAGGGCUCCCAACGCCUGGCUGAUUGAGUUUUCCGUGGCGGCUGUUGAUCAGGAAAGCCGCCUGGAUGCGUU .(((((..(.--..((...(((..----------((-.((.((((.......)))).)).))...)))...))..(((((((............))))))).)..))))). ( -32.30) >DroYak_CAF1 113362 100 - 1 UAUGCACUCUUUUUGGUUUAUUAC----------UU-UGCAGGGCUCCCAACGCCUGGCUGAUUGAGUUUUCCGUGGCGGCUGUUGAUCAGGAAAGCCGCCUGGAUGCGUU .((((((((.....(((.....))----------).-.((.((((.......)))).)).....))))..((((.(((((((............))))))))))).)))). ( -31.70) >consensus UAUGCACUCU__UUGGUUUAUUAU__________UU_UGUAGGGCUCCCAACGCCUGGCUGAUUGAGUUUUCCGUGGCGGCUGUUGAUCAGGAAAGCCGCCUGGAUGCGUU .(((((................................((.((((.......)))).))...........((((.(((((((.((......)).)))))))))))))))). (-24.82 = -25.35 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:55 2006