Locus 1370

Sequence ID	2L_DroMel_CAF1
Location	3,640,200 – 3,640,292
Length	92
Max. P	0.779134

overview

Window 1

Location	3,640,200 – 3,640,292
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	97.17
Mean single sequence MFE	-26.66
Consensus MFE	-23.74
Energy contribution	-23.94
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.43
Structure conservation index	0.89
SVM decision value	0.55
SVM RNA-class probability	0.779134
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3640200 92 + 22407834
UGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUAACUGGCU
.((((((((...(((((..((.((........)).))......(((((((((........))))))))))))))))))).)))......... ( -25.70)
>DroSec_CAF1 107895 92 + 1
UGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUAACUGGCU
.((((((((...(((((..((.((........)).))......(((((((((........))))))))))))))))))).)))......... ( -25.70)
>DroSim_CAF1 113630 92 + 1
UGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUAACUGGCU
.((((((((...(((((..((.((........)).))......(((((((((........))))))))))))))))))).)))......... ( -25.70)
>DroEre_CAF1 109733 89 + 1
---AUCUGUAUCUCGGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUAACUGCCU
---((((((.((((((((..((.....))...)))))).....(((((((((........)))))))))...))))))))............ ( -28.20)
>DroYak_CAF1 113120 92 + 1
UGUAUCUGUAUCUCUGUCCCGCUCCCAGUGCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUAACUGCCU
.((((((((...(((((.(((((.((((.((((..((.....)).))))........)))).)).))).)))))))))).)))......... ( -28.00)
>consensus
UGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUAACUGGCU
...((((((...(((((..((.((........)).))......(((((((((........))))))))))))))))))))............ (-23.74 = -23.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:53 2006