Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,632,564 – 3,632,670 |
Length | 106 |
Max. P | 0.506146 |
Location | 3,632,564 – 3,632,670 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 85.32 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -21.22 |
Energy contribution | -21.62 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -1.45 |
Structure conservation index | 0.82 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3632564 106 + 22407834 GACACAUUGACCCAUUCAAUUUUUUUCUCGCAGUGUAGCUUUAGAGUACCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA .....(((((.....))))).......((((..(((.((((.((.(.((((((((((....))))))))))))))))).)))(((......)))..))))...... ( -28.70) >DroSec_CAF1 100287 106 + 1 GACACAUUGAACCAUUCAAUUUUUUUCUCGCAGUGUAGAUUUAGAGUGCCAAACCGGCGAACUGGUUUGGUCAUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA .....(((((.....))))).......((((..(((..(((((....((((((((((....))))))))))..))))).)))(((......)))..))))...... ( -26.20) >DroSim_CAF1 105629 105 + 1 GACACAUUGAACCAUUCAAUUU-UUUCUCGCAGUGUAUCUUUACAGUGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA .....(((((.....)))))..-((((.((((.((((....)))).)))......((((((.(((((((.((......))))))))).))))))..).)))).... ( -28.30) >DroEre_CAF1 102026 95 + 1 A---------ACAAUUCCAUUU--UUUUCCCAGUGCAGCUAUAGAGUGUCAAACCGACGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA .---------............--........(((.(((........(((.....)))(((.(((((((.((......))))))))).)))))).)))........ ( -20.20) >DroYak_CAF1 105198 97 + 1 A--------AACUACUCCACUU-UUUCUCCCAGUGCAGUUAUAGAGCGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAAGCCAAUUCGCUACGCGAAACAAA .--------........((((.-........))))..(((((..((.((((((((((....)))))))))).))..))))).......(((((...)))))..... ( -26.10) >consensus GACACAUUGAACCAUUCAAUUU_UUUCUCGCAGUGUAGCUUUAGAGUGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA ................................(((((((........(((.....)))(((.(((((((.((......))))))))).))))))))))........ (-21.22 = -21.62 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:48 2006