Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,629,222 – 3,629,325 |
Length | 103 |
Max. P | 0.970845 |
Location | 3,629,222 – 3,629,325 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -32.92 |
Energy contribution | -32.37 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.12 |
Mean z-score | -3.59 |
Structure conservation index | 0.86 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.970845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3629222 103 + 22407834 GAAAGAGAUUUUCUUGGCAUGAGCA-CACUGCACUUAGCCCUCAUAAAGGGCCGAAUUUUCCUCAAAAUAAGUGUGGAAAGUUACGGCCCGCGGCCAAGCUUGG ............(((((((((((..-..(((....)))..)))))...((((((((((((((.((.......)).)))))))).))))))...))))))..... ( -35.70) >DroSec_CAF1 97042 101 + 1 GAAAGAGAUUUUCUUGGCAUGAGCUCCACUGCACUUAAUCCUCACAAAGGGCCGAGUUUUCCACAAAAUAAGUGUGGAAAGCUACGGCCCG---UCGAGCUUGG ............((((((....((......))................(((((((((((((((((.......))))))))))).)))))))---)))))..... ( -38.30) >DroSim_CAF1 102320 100 + 1 GAAAGAGAUUUUCUUGGCUUGAGCA-CACUGCACUUAACCCUCAUGAAGGGCCGAGUUUUCCACAAAAUAAGUGUGGAAAGCUACGGCCCG---UCGAGCUUGG ............((.(((((((((.-....))................(((((((((((((((((.......))))))))))).)))))).---))))))).)) ( -40.30) >consensus GAAAGAGAUUUUCUUGGCAUGAGCA_CACUGCACUUAACCCUCAUAAAGGGCCGAGUUUUCCACAAAAUAAGUGUGGAAAGCUACGGCCCG___UCGAGCUUGG ............(((((.....((......))................(((((((((((((((((.......))))))))))).))))))....)))))..... (-32.92 = -32.37 + -0.55)
Location | 3,629,222 – 3,629,325 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -29.05 |
Energy contribution | -28.83 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -2.78 |
Structure conservation index | 0.84 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.912889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3629222 103 - 22407834 CCAAGCUUGGCCGCGGGCCGUAACUUUCCACACUUAUUUUGAGGAAAAUUCGGCCCUUUAUGAGGGCUAAGUGCAGUG-UGCUCAUGCCAAGAAAAUCUCUUUC .....((((((...((((((.((.(((((.((.......)).))))).))))))))...(((((.((..........)-).)))))))))))............ ( -34.90) >DroSec_CAF1 97042 101 - 1 CCAAGCUCGA---CGGGCCGUAGCUUUCCACACUUAUUUUGUGGAAAACUCGGCCCUUUGUGAGGAUUAAGUGCAGUGGAGCUCAUGCCAAGAAAAUCUCUUUC ...(((((.(---(((((((.((.((((((((.......)))))))).))))))))..(((...........))))).)))))......((((.....)))).. ( -34.80) >DroSim_CAF1 102320 100 - 1 CCAAGCUCGA---CGGGCCGUAGCUUUCCACACUUAUUUUGUGGAAAACUCGGCCCUUCAUGAGGGUUAAGUGCAGUG-UGCUCAAGCCAAGAAAAUCUCUUUC .....(((((---.((((((.((.((((((((.......)))))))).)))))))).))..)))((((.((..(...)-..))..))))((((.....)))).. ( -34.00) >consensus CCAAGCUCGA___CGGGCCGUAGCUUUCCACACUUAUUUUGUGGAAAACUCGGCCCUUUAUGAGGGUUAAGUGCAGUG_UGCUCAUGCCAAGAAAAUCUCUUUC .....((((.....((((((.((.((((((((.......)))))))).))))))))....))))(((...(.((......)).)..)))((((.....)))).. (-29.05 = -28.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:47 2006