Locus 1366

Sequence ID 2L_DroMel_CAF1
Location 3,625,908 – 3,626,013
Length 105
Max. P 0.630479
window2233

overview

Window 3

Location 3,625,908 – 3,626,013
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -37.23
Consensus MFE -34.33
Energy contribution -34.67
Covariance contribution 0.34
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.20
SVM RNA-class probability 0.630479
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3625908 105 + 22407834
GUCUGGUCUUCGAGAGGAGUGGCCGAGAAGGCGGCGAUGAAGGAGGUAUUCCAAGGAGGAAAGCCACGGAUCGGGGAGGGCUACUCACCUCUUGAGGAAAUCGCU
((....(((((((((((.((.(((.....))).))(((...(..(((.((((.....)))).))).)..)))...(((.....))).)))))))))))....)). ( -38.90)
>DroSec_CAF1 93714 105 + 1
GUCUGGUCUUCGAGAGGAGUGGCCGAGGAGGCGGAGAUGGAGGAGGUAUUCCGAAGAGGAAAGCCACCGAUCGGGGAGGGCAACUCACCUCUUGAGGAAGUCGCU
((....(((((((((((....(((.....)))...(((...((.(((.((((.....)))).))).)).)))...(((.....))).)))))))))))....)). ( -39.10)
>DroSim_CAF1 99006 105 + 1
GUCUGGUCUUCGAGAGGAGUGGCCGAGGAGGCGGAGAUGGAGGAGGUAUUUCGAAGAAGAAAGCCACUGAUCGGGGAGGGCAACUCACCUCUUGAGGAAGUCGCU
((....(((((((((((((((((((......))((((((.......))))))..........)))))).......(((.....))).)))))))))))....)). ( -33.70)
>consensus
GUCUGGUCUUCGAGAGGAGUGGCCGAGGAGGCGGAGAUGGAGGAGGUAUUCCGAAGAGGAAAGCCACCGAUCGGGGAGGGCAACUCACCUCUUGAGGAAGUCGCU
((....(((((((((((....(((.....)))...(((...((.(((.((((.....)))).))).)).)))...(((.....))).)))))))))))....)). (-34.33 = -34.67 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:45 2006