Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,620,470 – 3,620,569 |
Length | 99 |
Max. P | 0.778354 |
Location | 3,620,470 – 3,620,569 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.52 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -14.51 |
Energy contribution | -14.98 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.24 |
Mean z-score | -1.90 |
Structure conservation index | 0.55 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3620470 99 - 22407834 ACCGAUUCAGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUUGGGUGACCUAAAGU--AGAAGCGAUCUUAAGUAAGAAAAUGUAAAUA ..((.(((..((((((((.(........).)))))))).........((((((.((....)).)))))--)))).)).((((....))))........... ( -24.70) >DroPse_CAF1 103464 94 - 1 ACCGAUUCUGUAGUGCCAAGAAGACCGCCAUGGGCCCAGAAUAACUCCACUUUGGGGUGACCUGAAAAAAGGACCCAAUUCAA-------UAAGGUAUGUG (((.((((((..(.(((..(........)...))))))))))...(((..((..((....))..))....)))..........-------...)))..... ( -19.90) >DroSim_CAF1 93585 99 - 1 ACCGAUUCGGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUGGGGUGACCUAAAGU--AGAAGCAAUCUUAAGUUAGAAAAUGUAAAUA ((((...))))(((((((.(........).)))))))...(((..(((((((((((....))))))))--))).....(((......)))...)))..... ( -29.30) >DroEre_CAF1 89908 97 - 1 ACCGCUUCCGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUGGGGUGACCUAAGGC--GGAAGCGAUUCAAAGU-UC-AAAUGUAAAUA ..((((((((((((((((.(........).))))))))...........(((((((....))))))))--))))))).........-..-........... ( -35.80) >DroYak_CAF1 92930 97 - 1 ACUGUUUCCGUGGUUCCCAGUAAGCCGCCAUGGGCCCAAAACAACUUUACUUUGGGGUGACCUAAAGU--GGAAGCGAUUUAAGUU-AC-AAAUGUAAAUA ..(((((((.(((..((((...........)))).)))..........((((((((....))))))))--))))))).......((-((-....))))... ( -29.30) >DroPer_CAF1 103518 94 - 1 ACCGAUUCUGUAGUGCCAAGAAGACCGCCAUGGGCCCAGAAUAACUCCACUUUGGGGUGACCUGAAAAAAGGACCCAAUUCAA-------UAAGGUAUGUG (((.((((((..(.(((..(........)...))))))))))...(((..((..((....))..))....)))..........-------...)))..... ( -19.90) >consensus ACCGAUUCCGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUGGGGUGACCUAAAGU__GGAAGCAAUUCAAAGU_A__AAAUGUAAAUA ......((((((((............))))))))..........((...(((((((....)))))))...))............................. (-14.51 = -14.98 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:44 2006