Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,616,544 – 3,616,645 |
Length | 101 |
Max. P | 0.892358 |
Location | 3,616,544 – 3,616,645 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 63.31 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -10.70 |
Energy contribution | -9.60 |
Covariance contribution | -1.10 |
Combinations/Pair | 1.20 |
Mean z-score | -1.99 |
Structure conservation index | 0.46 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3616544 101 - 22407834 UUAAUUAAACAUUUAUAAUCUUACUAUUCCAUGAGCUACGC-AGUUACUGAACUCAGAGCUCUUUACUUCAAGAGAUUGAGUAGU---------------UUAGAUUGUAUCUG-UUU ......(((((..((((((((.(((((((...(((((..(.-((((....)))))..)))))....(((...)))...)))))))---------------..))))))))..))-))) ( -25.60) >DroSim_CAF1 89627 102 - 1 UAAAUUAAACAUCUAUAACUUUACAUUCCGAUGAGCUACGGAAGUUACUGAACUCACAGCUCUUUACUUCGAGAGAUUGAGUAGU---------------UUAGGUUGUAUCUG-UUU ......(((((..((((((......(((((........)))))....((((((((.((((((((......))))).))).).)))---------------))))))))))..))-))) ( -25.70) >DroYak_CAF1 88519 106 - 1 UAAAAU----G--------CUUAUGUACUAAUGAGCUAUGAAAGUUAAUGAACUACGAGCUCUUUACUUCUUGGGUAUAAGUAGUUUUAGUAGUAAGAAGACAGGUUGUAACAGAUAC ......----(--------(((((......))))))((..(..(((.....(((((((((((((((((.....)))).))).)))))..))))).....)))...)..))........ ( -18.30) >consensus UAAAUUAAACAU_UAUAA_CUUACAUUCCAAUGAGCUACGAAAGUUACUGAACUCAGAGCUCUUUACUUCAAGAGAUUGAGUAGU_______________UUAGGUUGUAUCUG_UUU .....................(((...((...(((((.....((((....))))...))))).((((((.........))))))...................))..)))........ (-10.70 = -9.60 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:40 2006