Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,609,705 – 3,609,797 |
Length | 92 |
Max. P | 0.940374 |
Location | 3,609,705 – 3,609,797 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -20.77 |
Consensus MFE | -15.91 |
Energy contribution | -16.92 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.20 |
Mean z-score | -3.03 |
Structure conservation index | 0.77 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3609705 92 + 22407834 -UUUUGGUCUGCUC--UUUUUUUGGACCAUUGCCAUGCAUAUUUUAUGGUAUUU-UUUCGUGUUUCCACGAAUAAAAUUAGAUUUUUUAGAGCAGA -......(((((((--(...(((((.....(((((((.......)))))))(((-.((((((....)))))).))).)))))......)))))))) ( -23.70) >DroSec_CAF1 77522 93 + 1 UUCAUUGUCUGCUC--UUUUUUUGGACCAUUGCCAUGCAUAUUUUAUGGUAUUU-UUUCGUGUUUCCACGAAUAAAAUUAGAUUUUUUAGAGCAGA .......(((((((--(...(((((.....(((((((.......)))))))(((-.((((((....)))))).))).)))))......)))))))) ( -23.70) >DroSim_CAF1 82801 93 + 1 UUCAUUGUCUGCUC--UUUUUUUGGACCAUUGCCAUGCAUAUUUUAUGGUAUUU-UUUCGUGUUUCCACGAAUAAAAUUAGAUUUUUUAGAGCAGA .......(((((((--(...(((((.....(((((((.......)))))))(((-.((((((....)))))).))).)))))......)))))))) ( -23.70) >DroEre_CAF1 78885 92 + 1 CUCAUUGUCUGCUC---UUUUUUGGACCAUUGCCAUGCAUAUUUUAUGGCAUUU-UUUCGUUUUUCCACGAAUAAAAUUAGAUUUUUUAGAGCACA .........(((((---(............(((((((.......)))))))(((-.(((((......))))).)))............)))))).. ( -18.50) >DroYak_CAF1 81233 95 + 1 UUCAUUGUCUGCUCAUUUUUUUUGGACCAUUGCCGUGCAUAUUUUAUGGUAUUU-UUUCGUGUUUCCACGAAUAAAAUUAGAUUUUUUAGAGCAGA .......(((((((................(((((((.......)))))))(((-.((((((....)))))).))).............))))))) ( -23.00) >DroAna_CAF1 82320 83 + 1 UUCAAUUU-----U--UUUCUUCGGU------CCAUGCAUAUUUUAUGGUAUUUUUUUCGUGUUUCUACGAAAAAAAUUAGAUUUUUUAGAGCAAA ........-----.--.((((.....------(((((.......))))).((((((((((((....))))))))))))..........)))).... ( -12.00) >consensus UUCAUUGUCUGCUC__UUUUUUUGGACCAUUGCCAUGCAUAUUUUAUGGUAUUU_UUUCGUGUUUCCACGAAUAAAAUUAGAUUUUUUAGAGCAGA .......(((((((................(((((((.......))))))).....((((((....)))))).................))))))) (-15.91 = -16.92 + 1.00)
Location | 3,609,705 – 3,609,797 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -22.78 |
Consensus MFE | -14.57 |
Energy contribution | -16.23 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -5.05 |
Structure conservation index | 0.64 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3609705 92 - 22407834 UCUGCUCUAAAAAAUCUAAUUUUAUUCGUGGAAACACGAAA-AAAUACCAUAAAAUAUGCAUGGCAAUGGUCCAAAAAAA--GAGCAGACCAAAA- ((((((((..........(((((.((((((....)))))))-))))(((((......(((...))))))))........)--)))))))......- ( -26.60) >DroSec_CAF1 77522 93 - 1 UCUGCUCUAAAAAAUCUAAUUUUAUUCGUGGAAACACGAAA-AAAUACCAUAAAAUAUGCAUGGCAAUGGUCCAAAAAAA--GAGCAGACAAUGAA ((((((((..........(((((.((((((....)))))))-))))(((((......(((...))))))))........)--)))))))....... ( -26.60) >DroSim_CAF1 82801 93 - 1 UCUGCUCUAAAAAAUCUAAUUUUAUUCGUGGAAACACGAAA-AAAUACCAUAAAAUAUGCAUGGCAAUGGUCCAAAAAAA--GAGCAGACAAUGAA ((((((((..........(((((.((((((....)))))))-))))(((((......(((...))))))))........)--)))))))....... ( -26.60) >DroEre_CAF1 78885 92 - 1 UGUGCUCUAAAAAAUCUAAUUUUAUUCGUGGAAAAACGAAA-AAAUGCCAUAAAAUAUGCAUGGCAAUGGUCCAAAAAA---GAGCAGACAAUGAG ..((((((................(((((......))))).-...((((((.........))))))............)---)))))......... ( -19.50) >DroYak_CAF1 81233 95 - 1 UCUGCUCUAAAAAAUCUAAUUUUAUUCGUGGAAACACGAAA-AAAUACCAUAAAAUAUGCACGGCAAUGGUCCAAAAAAAAUGAGCAGACAAUGAA (((((((...........(((((.((((((....)))))))-))))(((((......(((...))))))))...........)))))))....... ( -25.20) >DroAna_CAF1 82320 83 - 1 UUUGCUCUAAAAAAUCUAAUUUUUUUCGUAGAAACACGAAAAAAAUACCAUAAAAUAUGCAUGG------ACCGAAGAAA--A-----AAAUUGAA ((((.((((.........(((((((((((......)))))))))))..((((...))))..)))------).))))....--.-----........ ( -12.20) >consensus UCUGCUCUAAAAAAUCUAAUUUUAUUCGUGGAAACACGAAA_AAAUACCAUAAAAUAUGCAUGGCAAUGGUCCAAAAAAA__GAGCAGACAAUGAA (((((((.................((((((....)))))).......((((.........))))..................)))))))....... (-14.57 = -16.23 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:40 2006