Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,606,249 – 3,606,377 |
Length | 128 |
Max. P | 0.943365 |
Location | 3,606,249 – 3,606,353 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 74.88 |
Mean single sequence MFE | -27.25 |
Consensus MFE | -19.58 |
Energy contribution | -18.70 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.30 |
Mean z-score | -0.88 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3606249 104 + 22407834 CAAGUUGUUCUGAGCCAGUUUUGAACUUGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGUGAGGCCGAUGUGGAA ((((((...(((...))).....))))))...((((.(((..(...((((.....))))...(((((((((((......)))).))))))))..))).)))).. ( -29.40) >DroPse_CAF1 81398 89 + 1 ---------------CUGUUUUUUGCGGAUAAUUACCUUGUUCUCUGCUGAUAUUGAGCUCGUCGUCGACGGUUAUGUUGCUGAUCGGCGAGGCGGAAGUGGAA ---------------(..(((((.(((((.(((......))).))))).........(((..(((((((((((......)))).)))))))))))))))..).. ( -26.30) >DroGri_CAF1 89123 84 + 1 --------------------UUUAGCUGGUGCUUACCUUGUUCUCUGCUUAUGUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAAGUAGAA --------------------...(((.(((....)))..))).(((((((.......(((..(((((((((((......)))).))))))))))..))))))). ( -25.50) >DroEre_CAF1 75449 104 + 1 CAACUCGUUCUGAGCCAGUUUUGGACUUGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAUGUGGAG ...(((((((.(((((......)).)))))))((.((((....((.((....)).))((((((((.(.(((....))).).)))))))))))).)).....))) ( -29.90) >DroMoj_CAF1 96774 80 + 1 ----------------------U--CUCGUGCCUACCUUGUUCUCUGCUUAUGUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAAGCUGAAGUGGAA ----------------------.--..................((..(((......((((..(((((((((((......)))).))))))))))).)))..)). ( -24.10) >DroPer_CAF1 81677 89 + 1 ---------------CUGUUUUUAGCGGAUAAUUACCUUGUUCUCUGCUGAUAUUGAGCUCGUCGUCGACGGUUAUGUUGCUGAUCGGCGAGGCGGAAGUGGAA ---------------(..(((((((((((.(((......))).))))))).......(((..(((((((((((......)))).)))))))))).))))..).. ( -28.30) >consensus _______________C_GUUUUUAGCUGGUACCUACCUUGUUCUCUGCUUAUGUUGAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAAGUGGAA ................................((((..........((((.....)))).(.(((((((((((......)))).))))))).).....)))).. (-19.58 = -18.70 + -0.88)
Location | 3,606,276 – 3,606,377 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 75.44 |
Mean single sequence MFE | -29.07 |
Consensus MFE | -23.00 |
Energy contribution | -22.20 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.22 |
Mean z-score | -1.41 |
Structure conservation index | 0.79 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3606276 101 + 22407834 UGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGUGAGGCCGAUGUGGAAGACAUUAUACU-------GUCUUUGUUGGCC .((((.......))))...((((.....))))...(((((((((((......)))).)))))))(((((((...(((((((......)-------))))))))))))) ( -33.60) >DroPse_CAF1 81410 94 + 1 GAUAAUUACCUUGUUCUCUGCUGAUAUUGAGCUCGUCGUCGACGGUUAUGUUGCUGAUCGGCGAGGCGGAAGUGGAAGACAUGGUAAU-------CCCCGU------- ....((((((.(((..((..((........(((..(((((((((((......)))).))))))))))...))..))..))).))))))-------......------- ( -32.50) >DroGri_CAF1 89130 96 + 1 GGUGCUUACCUUGUUCUCUGCUUAUGUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAAGUAGAAGACAUAUUCCCUUUU---GUU---------U (((....))).(((..(((((((.......(((..(((((((((((......)))).))))))))))..)))))))..)))...........---...---------. ( -29.40) >DroWil_CAF1 106719 89 + 1 GAAAUUUACCUUGUUCUCUGCUCAAAUUAAGUUCGUCAUCCACUGUUAUGUUGCUGAUGGGUGAGGCCGAUGUGGAAGACAUUAUUCC---------U---------- ...........(((..((..(((..........(((((.(.((......)).).)))))((.....)))).)..))..))).......---------.---------- ( -16.60) >DroMoj_CAF1 96777 99 + 1 CGUGCCUACCUUGUUCUCUGCUUAUGUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAAGCUGAAGUGGAAGACAUAUUCCCUUUUUGUGUC---------U ................((..(((......((((..(((((((((((......)))).))))))))))).)))..))(((((((.........))))))---------) ( -29.80) >DroPer_CAF1 81689 94 + 1 GAUAAUUACCUUGUUCUCUGCUGAUAUUGAGCUCGUCGUCGACGGUUAUGUUGCUGAUCGGCGAGGCGGAAGUGGAAGACAUGGUAAU-------CCCCGU------- ....((((((.(((..((..((........(((..(((((((((((......)))).))))))))))...))..))..))).))))))-------......------- ( -32.50) >consensus GAUACUUACCUUGUUCUCUGCUUAUAUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAAGUGGAAGACAUAAUACC_______GUC__________ ...........(((..((((((........(((..(((((((((((......)))).))))))))))...))))))..)))........................... (-23.00 = -22.20 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:38 2006