| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,603,598 – 3,603,705 |
| Length | 107 |
| Max. P | 0.533452 |
| Location | 3,603,598 – 3,603,705 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 77.52 |
| Mean single sequence MFE | -14.06 |
| Consensus MFE | -0.20 |
| Energy contribution | -0.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.01 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3603598 107 + 22407834 GGACCACACCUCAAAGUUAAACAAUAACCAUAGUGUUACCGAAAUCGAAACCGAUUCAUGACAAAAUCAUAGCAAAACUGACAUCAAAUUCAAUUCGAUUCGAUUUC ((...((((......((((.....))))....))))..))(((((((((..(((...((((.....))))........(((........)))..))).))))))))) ( -15.40) >DroSec_CAF1 71097 107 + 1 GGACCACACCUCAAAGUUAAACAAUAACCAUAGUGUUACCGAAAUCGAAACCGAGUCAUGACAAAAUCAUAGCAAAACUGACAUCAAAUUCAAUUCGAUUCGAUUUC ((...((((......((((.....))))....))))..))(((((((((..((((..((((.....))))..).....(((........)))..))).))))))))) ( -18.00) >DroSim_CAF1 76108 107 + 1 GGACCACACCUCAAAGUUAAACAAUGACCAUAGUGUUACCGAAAUCGAAACCGAGUCAUGACAAAAUCAUAGCAAAACUGACAUCAAAUUCAAUUCGAUUCGAAUUC ((...((((......((((.....))))....))))..))(((.(((((..((((..((((.....))))..).....(((........)))..))).))))).))) ( -14.40) >DroEre_CAF1 72881 84 + 1 GGACCACACCUCAAAGCGAAAUCGAA---AACGAGUCAA--------------------GACAAAAUCAUAGCAAAACUGGCAUCACAUUCAAUUCAAUUCGAUUUC ((......)).......(((((((((---.....((...--------------------.)).........((.......))................))))))))) ( -10.40) >DroYak_CAF1 74975 81 + 1 GGACCACACCUCAAAGUUAAACAAUAACCAUAGUGUUAC----------------------CGAAAUCG----AAAACUGGCAUCAAAUUCAAUUCGAUGCGAUUUC ((...((((......((((.....))))....))))..)----------------------)(((((((----....)..(((((...........))))))))))) ( -12.10) >consensus GGACCACACCUCAAAGUUAAACAAUAACCAUAGUGUUACCGAAAUCGAAACCGA_UCAUGACAAAAUCAUAGCAAAACUGACAUCAAAUUCAAUUCGAUUCGAUUUC ((......))................................................................................................. ( -0.20 = -0.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:36 2006