Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,597,449 – 3,597,567 |
Length | 118 |
Max. P | 0.821332 |
Location | 3,597,449 – 3,597,567 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.35 |
Mean single sequence MFE | -32.37 |
Consensus MFE | -28.42 |
Energy contribution | -28.78 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.57 |
Structure conservation index | 0.88 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3597449 118 + 22407834 UGCAGCUUUCGUGCUUCAGAUGGCCGGCGGCUAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU ..........((((..(((((((((...))))..)))))..))))((((((((--((((((.....)))))).....(((((.((.....))))))).......))))))))........ ( -28.90) >DroVir_CAF1 77404 118 + 1 UGCAGCUUUCGUGCUGCACAUGGCCGGCGGCCAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU ((((((......))))))..(((((...)))))........(((((..((((.--((((((.....))))))......((((.((.....))))))))))..)))))............. ( -32.50) >DroPse_CAF1 71935 118 + 1 UGCAGCUUUCGUGCUGCAUUUGGCCGGCGGCGAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU ((((((......))))))........(((((((...)))))))..((((((((--((((((.....)))))).....(((((.((.....))))))).......))))))))........ ( -33.00) >DroGri_CAF1 79032 120 + 1 UGCAACUUUCGUGCUGCACAUGGCCGGCGGCCAAAUUUGUCGCACGUUGGGUAUAUUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU ..........((((.(((..(((((...)))))....))).))))((((((((((((((((.....)))))).....(((((.((.....))))))).....))))))))))........ ( -32.00) >DroWil_CAF1 96391 118 + 1 UGCAGCUUUCGUGCUGCAUAUGGCCUGCGGCCAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGGGCUUAACAUAAAAAU .((.((((.(((((.(((..(((((...)))))....))).)))))..)))).--........(((.(((......)))))).))....(((((((.....)))))))............ ( -34.80) >DroPer_CAF1 72215 118 + 1 UGCAGCUUUCGUGCUGCAUUUGGCCGGCGGCGAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU ((((((......))))))........(((((((...)))))))..((((((((--((((((.....)))))).....(((((.((.....))))))).......))))))))........ ( -33.00) >consensus UGCAGCUUUCGUGCUGCAUAUGGCCGGCGGCCAAAUUUGUCGCACGUUGAGUA__UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU ((((((......))))))........(((((.......)))))..((((((((..((((((.....)))))).....(((((.((.....))))))).......))))))))........ (-28.42 = -28.78 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:35 2006