Locus 1357

Sequence ID 2L_DroMel_CAF1
Location 3,596,683 – 3,596,775
Length 92
Max. P 0.500000
window2220

overview

Window 0

Location 3,596,683 – 3,596,775
Length 92
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.30
Mean single sequence MFE -22.73
Consensus MFE -13.10
Energy contribution -13.38
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.59
Structure conservation index 0.58
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3596683 92 - 22407834
UAUUUUUCAA---UUAAGUGC-----AACUU--GCCAACUAAUUCCGCACCUGUCUUUUCGGGGUCCGACCCGCCUUGGCCGGGGCAUACAAUUUAAUAUUA
.........(---((((((..-----....(--(((.........((..((((......))))...)).((.((....)).))))))....))))))).... ( -20.40)
>DroSec_CAF1 64246 91 - 1
UAUUUUUCAA---UUAGGAGC-----AACUU--GCCAACCAAUUCCGCACCUGACUUUUCGGGGUCCGGCCCGC-UUGGCCGGGGCAUACAAUUUAAUAUUA
.........(---(((((...-----....(--(((..........((.(((((....)))))))((((((...-..)))))))))).....)))))).... ( -24.40)
>DroSim_CAF1 69257 92 - 1
UAUUUUUCAA---UUAGGUGC-----AACUU--GCCAACCAAUUCCGCACCUGACUUUUCGGGGUCCGGCCCGCCUUGGCCGGGGCAUACAAUUUAAUAUUA
.........(---((((((..-----....(--(((..........((.(((((....)))))))((((((......))))))))))....))))))).... ( -27.30)
>DroEre_CAF1 66126 90 - 1
UACUAUUCAACAUUUAUGUAUAAUCGCGCUU---CCAGCUAAUUCCGCACCUGACUUUCGGG-------GCCGCCU-GGCCG-GGCAUACAAUUUAAUAUUA
................(((((....((....---...)).......((.((((.....))))-------)).((((-....)-))))))))........... ( -17.70)
>DroYak_CAF1 67754 94 - 1
UACUUUUCAA---UUAGGUGC-----CACUUAAGCCAGCUAAUUCCGCGCCUGACUUUUCGGACUCCAGUCCGCCUUGGCCGGGGCAUACAAUUUAAUAUUA
..........---((((((((-----......((....))......))))))))......((((....))))(((((....)))))................ ( -23.70)
>DroAna_CAF1 69845 83 - 1
UAGUCUUCAC---UU-------------CUU--GGCUAGCAACUCCGCUCCUG-CUUUUCGGGGUCUCGCCCGCCUUGGCCGGGGCAUACAAUUUAAUAUUA
(((((.....---..-------------...--)))))........(((((.(-((...((((......))))....))).)))))................ ( -22.90)
>consensus
UAUUUUUCAA___UUAGGUGC_____AACUU__GCCAACCAAUUCCGCACCUGACUUUUCGGGGUCCGGCCCGCCUUGGCCGGGGCAUACAAUUUAAUAUUA
..............................................((.((((.((...((((......))))....)).))))))................ (-13.10 = -13.38 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:33 2006