Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,595,769 – 3,595,862 |
Length | 93 |
Max. P | 0.720799 |
Location | 3,595,769 – 3,595,862 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.68 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -17.16 |
Energy contribution | -18.72 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.98 |
Structure conservation index | 0.51 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720799 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3595769 93 + 22407834 AAG-------CCUGGCGCGUAAA------AAAUGCCGAAGGUGGAGCCUGAUUUUCGGCUUUGGGGCGUGGGC--UGAAGAAGCUCCACUGCCGACGCAAAUUAUCCA ..(-------(.((((((((...------..))))....((((((((....((((((((((........))))--)))))).))))))))))))..)).......... ( -33.70) >DroSec_CAF1 63342 93 + 1 AUG-------CCUGGCGCGUAAA------AAAUGCCGAAGGUGGAGCCUGAUUUUCGGCUUUGGGGCGUGGGC--UGAAGAAGCUCCACUGCCGACGCAAAUUAUCCA .((-------(.((((((((...------..))))....((((((((....((((((((((........))))--)))))).))))))))))))..)))......... ( -34.50) >DroEre_CAF1 65218 74 + 1 G-------------------------------CGCCGAAGGUGGAGCCAGAUUUUCGGCU-UGGGGCGUGGGC--UGAAGAAGCUCCACUGGCGACGCAAAUUGUCCA (-------------------------------((.((..((((((((....(((((((((-(.......))))--)))))).))))))))..)).))).......... ( -32.90) >DroYak_CAF1 66751 93 + 1 AAG-------CCUGGCGCGUAAA------AAAUGCCGAAGGUGGAGCCAGAUUUUCGGCUUUGGGGCGUGGGC--UGAAGAAGCUCCACUGCCGACGCAAAUUAUCCA ..(-------(.((((((((...------..))))....((((((((....((((((((((........))))--)))))).))))))))))))..)).......... ( -33.70) >DroAna_CAF1 68852 100 + 1 AAAAUCAGGCCCGGGCGCGUAAA------AAAUGCCGAAGGUGGAGCCAGCUUUUCGGCUUUGGGGCGUGGGC--UGAAGAAGCUCCACUCCCGACGCAAAUUAUCGA ........((....))((((...------....(((((((.((....)).))..)))))....(((.((((((--(.....))).)))).))).)))).......... ( -36.50) >DroPer_CAF1 70614 88 + 1 G----------CUGCAUCUUAAAUGCCGA--AUGCCGAAGGUGGAGCCAG--------CUUUGGGGCGUGAGCAUUGAAGAAGCUUCACUCCGGAGUCAAAUUAUCGA .----------..((((.....)))).((--...(((..((((((((...--------(((..(.((....)).)..)))..)))))))).)))..)).......... ( -29.50) >consensus AAG_______CCUGGCGCGUAAA______AAAUGCCGAAGGUGGAGCCAGAUUUUCGGCUUUGGGGCGUGGGC__UGAAGAAGCUCCACUGCCGACGCAAAUUAUCCA ................................(((((..((((((((....((((((((((........))))..)))))).))))))))..))..)))......... (-17.16 = -18.72 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:32 2006