Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,582,949 – 3,583,042 |
Length | 93 |
Max. P | 0.985373 |
Location | 3,582,949 – 3,583,042 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 75.59 |
Mean single sequence MFE | -18.92 |
Consensus MFE | -12.32 |
Energy contribution | -12.77 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.25 |
Mean z-score | -1.34 |
Structure conservation index | 0.65 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3582949 93 + 22407834 AUUUCCCAUAUACAUAGAUGUUUUUUUAAGUGCAAGGG-UAAAGGAGAAACCAGUCCCUCCUGCUCCUGGCUGCCCUAUCCUUGCCCUUCCUUU ...........................(((.(((((((-((.(((((..........)))))((.....)).....))))))))).)))..... ( -20.30) >DroSec_CAF1 50671 92 + 1 CUUUCCAAUAUAAAU-GAUUUUUUUUUAAGUGCAAGGG-AAGAGGAGAAACCAGUCCCUCCUGCUCCUGGCUGCCCUAUCCUUGCCCUUCCUUU ...............-...........(((.(((((((-.(((((((..........)))))((.....))....)).))))))).)))..... ( -19.10) >DroSim_CAF1 53380 91 + 1 CUUUCCAAUAUAACU-GAUUUU-UUUUAAGUGCAAGGG-AAGAGGAGAAACCAGUCCCUCCUGCUCCUGGCUGCCCUAUCCUUGCCCUUCCUUU ...............-......-....(((.(((((((-.(((((((..........)))))((.....))....)).))))))).)))..... ( -19.10) >DroEre_CAF1 52662 77 + 1 ---------------CUAUGUUUUUUUGAGUGCAAGGG-AGCAGGAGAAACCAGUCCCUCCUGCUCCUGGCUGCCCCAUCC-UGCCCUGCCUUU ---------------............(((.(((.(((-((((((((..........)))))))))))(((..........-.))).)))))). ( -27.70) >DroYak_CAF1 53309 78 + 1 ---------------AUUUGUUUUUUUCAGUGCAAGGG-AAAAGGAGAAACCAGUCCCUCCUGCUCCUGGCUGCCCUAUCCUUGCCCUGCCUUU ---------------............(((.(((((((-...(((((..........)))))((.....)).......))))))).)))..... ( -19.70) >DroAna_CAF1 54841 74 + 1 --------------------UAUUUUCAAGUGCAGAGAAUAAAAGAGAAACCAGUCCCUCCUGCUCCUUCCUGUCCUAGCCCAUCUUGUCCUUU --------------------......((((.((((.((....(((.((...(((......))).)))))....)))).))....))))...... ( -7.60) >consensus ________________GAUGUUUUUUUAAGUGCAAGGG_AAAAGGAGAAACCAGUCCCUCCUGCUCCUGGCUGCCCUAUCCUUGCCCUUCCUUU ...........................(((.((((((.....(((((..........)))))((........)).....)))))).)))..... (-12.32 = -12.77 + 0.45)
Location | 3,582,949 – 3,583,042 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 75.59 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -17.62 |
Energy contribution | -18.07 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.24 |
Mean z-score | -2.22 |
Structure conservation index | 0.70 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3582949 93 - 22407834 AAAGGAAGGGCAAGGAUAGGGCAGCCAGGAGCAGGAGGGACUGGUUUCUCCUUUA-CCCUUGCACUUAAAAAAACAUCUAUGUAUAUGGGAAAU .....(((.((((((..((((.((((((............)))))).).)))...-.)))))).))).........(((((....))))).... ( -23.00) >DroSec_CAF1 50671 92 - 1 AAAGGAAGGGCAAGGAUAGGGCAGCCAGGAGCAGGAGGGACUGGUUUCUCCUCUU-CCCUUGCACUUAAAAAAAAAUC-AUUUAUAUUGGAAAG .....(((.((((((...((....)).((((.(((((..(....)..))))))))-))))))).)))...........-............... ( -26.60) >DroSim_CAF1 53380 91 - 1 AAAGGAAGGGCAAGGAUAGGGCAGCCAGGAGCAGGAGGGACUGGUUUCUCCUCUU-CCCUUGCACUUAAAA-AAAAUC-AGUUAUAUUGGAAAG .....(((.((((((...((....)).((((.(((((..(....)..))))))))-))))))).)))....-......-............... ( -26.60) >DroEre_CAF1 52662 77 - 1 AAAGGCAGGGCA-GGAUGGGGCAGCCAGGAGCAGGAGGGACUGGUUUCUCCUGCU-CCCUUGCACUCAAAAAAACAUAG--------------- ....(.((.(((-((.(((.....)))((((((((((..(....)..))))))))-))))))).)))............--------------- ( -32.40) >DroYak_CAF1 53309 78 - 1 AAAGGCAGGGCAAGGAUAGGGCAGCCAGGAGCAGGAGGGACUGGUUUCUCCUUUU-CCCUUGCACUGAAAAAAACAAAU--------------- .....(((.(((((....((....)).((((.(((((..(....)..))))).))-))))))).)))............--------------- ( -26.50) >DroAna_CAF1 54841 74 - 1 AAAGGACAAGAUGGGCUAGGACAGGAAGGAGCAGGAGGGACUGGUUUCUCUUUUAUUCUCUGCACUUGAAAAUA-------------------- ......((((....((..(((...((((((((((......)))....)))))))..)))..)).))))......-------------------- ( -16.10) >consensus AAAGGAAGGGCAAGGAUAGGGCAGCCAGGAGCAGGAGGGACUGGUUUCUCCUUUU_CCCUUGCACUUAAAAAAACAUC________________ .....(((.((((((.....((........))(((((..(....)..))))).....)))))).)))........................... (-17.62 = -18.07 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:22 2006