Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,582,028 – 3,582,120 |
Length | 92 |
Max. P | 0.868786 |
Location | 3,582,028 – 3,582,120 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.71 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -22.97 |
Energy contribution | -23.02 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.93 |
Structure conservation index | 0.75 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3582028 92 + 22407834 -------UUAAUGCGCUAAACGGCCCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCCAGCUCUCCGGCUGCCGGUUGGUUGGCCACGAAAUAAGCAGGA -------.......(((....(((((......((((.......)))).)).)))---(((((((..((((...))))..))))))).........))).... ( -26.10) >DroVir_CAF1 58033 95 + 1 UUGAAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCCUGC--UCCGGCUGCCGGUUGGUCAGCUACAACUCCAGCAU-- ...........((((((....)))))).(((..((((((((...(((.(((((.---....))--))).).))...))))))))..)))...........-- ( -33.80) >DroPse_CAF1 54780 99 + 1 CUGCAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCUGCUGCCAGC--UUCGGCUGCCGGUUGGUCAGCAUCCAA-CAUCCAGCA ...(((((...((((((....))))))...))))).............(((((((....))))--))).((((...(((((.......))))-)...)))). ( -33.50) >DroGri_CAF1 60579 95 + 1 GUGCUUUUUAAUGCGCUAAACGGCUCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCUUGC--UUCGGCUGCCGGUUGGUCAGCUCCAACUCCAACUC-- ((((........))))....((((..(((((.....(((.......)))....)---))))((--....)).))))(((((......)))))........-- ( -26.30) >DroMoj_CAF1 66176 86 + 1 AUGAAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCCUGC--UCCGGCUGCCGGUUGGUCAGAUCC------GG----- ...........((((((....))))))......((((((((...(((.(((((.---....))--))).).))...)))))))).....------..----- ( -30.40) >DroPer_CAF1 54892 99 + 1 CUGCAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCUGCUGCCAGC--UUCGGCUGCCGGUUGGUCAGCAUCCAA-CAUCCAGCA ...(((((...((((((....))))))...))))).............(((((((....))))--))).((((...(((((.......))))-)...)))). ( -33.50) >consensus CUGCAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCU___GCCAGC__UCCGGCUGCCGGUUGGUCAGCUACAAA_CAAGCAG__ ...........((((((....))))))......((((((((.....(((.((((..............)))).))))))))))).................. (-22.97 = -23.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:21 2006