Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 420,128 – 420,265 |
Length | 137 |
Max. P | 0.811916 |
Location | 420,128 – 420,228 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.08 |
Mean single sequence MFE | -32.35 |
Consensus MFE | -22.81 |
Energy contribution | -22.87 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.27 |
Mean z-score | -1.20 |
Structure conservation index | 0.70 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 420128 100 - 22407834 GCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCUUCGUCCCCG---AUUGCAAU------AUCGAAAAACUUACGGUGACGGCGACAUCGUC (((((((.(((((..((..(((((...))))).))..))))).)))))))...(((((((---((......------))))..........(....))).)))...... ( -35.70) >DroSec_CAF1 60 106 - 1 GCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCUGCGUCCCCG---AUUGCAAAAUCAAAAUCGAAAAACUUACGGUGACGGCGACAUCGUC (((((((.(((((..((..(((((...))))).))..))))).)))))))...(((((((---(((..........)))))..........(....))).)))...... ( -36.10) >DroSim_CAF1 60 106 - 1 GCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCUGCGUCCCCG---AUUGCAAAAUCAAAAUCGAAAAACUUACGGUGACGGCGACAUCGUC (((((((.(((((..((..(((((...))))).))..))))).)))))))...(((((((---(((..........)))))..........(....))).)))...... ( -36.10) >DroEre_CAF1 60 100 - 1 GCAUAUUGUCCAAUACUUCCGGCUGAUGGCCAAGGCUUUGGAGGAUUUGCGGCGUCCCCG---AUUGCGAA------AUUGAAAAACUUACGGUGACGGCGACAUCGUC (((.(((.(((((..(((..(((.....))).)))..))))).))).)))(..(((((((---(((....)------))))..........(....))).)))..)... ( -29.70) >DroYak_CAF1 60 103 - 1 GCCAAUCGUCCAAUGCUUCCGCCCGAUGGCCGGGGCUUUGGAGGAUUUGCGGCGUCUGCGUAGUUUGCAAA------AUCGAAGAACUUACGGUGACGGCGACAUCGUC ((.((((.(((((.(((((.(((....))).))))).))))).)))).))(.((((..((((((((.....------......)))).))))..)))).)......... ( -38.70) >DroMoj_CAF1 60 94 - 1 ACAAAUCAACAAUUUAACACGGAGGAUUGUCGUUAGUUUUGCAGAUUUGUUUUGAGUUCG---AUUU-----------UUA-GCAACUUACGGUGACGGCGACAUCAUC (((((((..(((.(((((((((....)))).)))))..)))..)))))))..(((((((.---....-----------...-).)))))).(((((.(....).))))) ( -17.80) >consensus GCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCUGCGUCCCCG___AUUGCAAA______AUCGAAAAACUUACGGUGACGGCGACAUCGUC (((((((.(((((......(((((...))))).....))))).)))))))........................................((....))(((....))). (-22.81 = -22.87 + 0.06)
Location | 420,162 – 420,265 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 73.82 |
Mean single sequence MFE | -34.87 |
Consensus MFE | -20.10 |
Energy contribution | -20.05 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.40 |
Mean z-score | -1.62 |
Structure conservation index | 0.58 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 420162 103 - 22407834 CACAAGUUGCAGCAGUGCGAAAGAAACCAUAGGACCCGCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCU--UCGUCCCCG---AUUGCA ...........(((((.(....)........((((..(((((((.(((((..((..(((((...))))).))..))))).))))))).--..))))...---))))). ( -37.00) >DroVir_CAF1 86 103 - 1 UAUAAGGUUCACAAAUCCUAUGCAAAUAUUACUAUGUGCAAAUUAGCAAACAAUUGCUGGGGAUUGUCGCAAUUUUUGCAGAUUCGUUUUUUAAGUUCA---UUUU-- .....(..((...((((((.((((.(((....))).))))...((((((....))))))))))))...(((.....))).))..)..............---....-- ( -18.30) >DroSec_CAF1 100 103 - 1 CACAUGUUGCGGCAGUGCGAAAGAUACCGUAAGACCCGCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCU--GCGUCCCCG---AUUGCA ......((((((.....(....)...))))))((((.(((((((.(((((..((..(((((...))))).))..))))).))))))).--).)))....---...... ( -36.80) >DroSim_CAF1 100 103 - 1 CACAUGUUGCGGCAGUGCGAAAAAUAGCGUAAGACCCGCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCU--GCGUCCCCG---AUUGCA ....(((..(((...((((........)))).((((.(((((((.(((((..((..(((((...))))).))..))))).))))))).--).))).)))---...))) ( -35.90) >DroEre_CAF1 94 103 - 1 CACAUGUUGCAGCAGUGCAAAACAAACCGUAGGACACGCAUAUUGUCCAAUACUUCCGGCUGAUGGCCAAGGCUUUGGAGGAUUUGCG--GCGUCCCCG---AUUGCG ......(((((....))))).......((((((((.((((.(((.(((((..(((..(((.....))).)))..))))).))).))))--..))))...---..)))) ( -32.80) >DroYak_CAF1 94 106 - 1 CACAUGUUGCAGCAAUGCGCAAUAUACCGUAAGACCCGCCAAUCGUCCAAUGCUUCCGCCCGAUGGCCGGGGCUUUGGAGGAUUUGCG--GCGUCUGCGUAGUUUGCA ........(((....)))((((..(((.(((.(((((((.((((.(((((.(((((.(((....))).))))).))))).)))).)))--).)))))))))..)))). ( -48.40) >consensus CACAUGUUGCAGCAGUGCGAAACAAACCGUAAGACCCGCAAAUUGUCCAAUACUUCCGGCCGAUGGCCGCGGCUUUGGAGGAUUUGCU__GCGUCCCCG___AUUGCA ...........((((((((........))))......(((((((.(((((......(((((...))))).....))))).)))))))................)))). (-20.10 = -20.05 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:05 2006