Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,580,895 – 3,580,995 |
Length | 100 |
Max. P | 0.999901 |
Location | 3,580,895 – 3,580,995 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 95.30 |
Mean single sequence MFE | -34.01 |
Consensus MFE | -32.10 |
Energy contribution | -32.10 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.31 |
Structure conservation index | 0.94 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3580895 100 + 22407834 AGAGCGAGCGGAGAGCGGGAGAAAUUCAGGUUGGCCAGGUGCAAACUCGUUUUGUCUGUGUAUUCUGAGCACCUUUACUCCCGCUCUCACCCACACAC--GC-- ...(.(.(..(((((((((((.((...((((..((((((((((.((.......))...)))).)))).)))))))).)))))))))))..)).)....--..-- ( -35.30) >DroSec_CAF1 48649 100 + 1 AGAGCGAGCGGAGAGCGGGAGAAAUUCAGGUUGGCCAGGUGCAAACUCGUUUUGUCUGUGUAUUCUGAGCACCUUUACUCCCGCUCUCACCCACACAC--AC-- ...(.(.(..(((((((((((.((...((((..((((((((((.((.......))...)))).)))).)))))))).)))))))))))..)).)....--..-- ( -35.30) >DroSim_CAF1 51373 100 + 1 AGAGCGAGCGGAGAGCGGGAGAAAUUCAGGUUGGCCAGGUGCAAACUCGUUUUGUCUGUGUAUUCUGAGCACCUUAACUCCCGCUCUCACCCACACAC--GC-- ...(.(.(..(((((((((((...((.((((..((((((((((.((.......))...)))).)))).)))))).)))))))))))))..)).)....--..-- ( -35.20) >DroEre_CAF1 50614 102 + 1 AGAGCGAGCGGAGAGCGGGAGAAAUUCAGGUUGGCCAGGUGGAAACUCGUUUUGUCUGUGUAUUUUGAGCGCCUUUACUCCCGCUCUCACCCACACACACAC-- ...(.(.(..((((((((((((((((((((...((((((..(((.....)))..)))).))..))))))....))).)))))))))))..)).)........-- ( -35.50) >DroYak_CAF1 51200 104 + 1 AGAGCGAGCGGAGAGCUGGAGAAAUUCAGGUUGGCCAGGUGCAAACUCGUUUUGUCUGUGUAUUUUGAGCACCUUUACUCCCGCUCUCACCCACACACACACGC ...(.((((((.((((((((....))))).......((((((..........................))))))...))))))))).)................ ( -28.77) >consensus AGAGCGAGCGGAGAGCGGGAGAAAUUCAGGUUGGCCAGGUGCAAACUCGUUUUGUCUGUGUAUUCUGAGCACCUUUACUCCCGCUCUCACCCACACAC__AC__ ...(.(.(..(((((((((((......((((..((((((((((.((.......))...)))).)))).))))))...)))))))))))..)).).......... (-32.10 = -32.10 + 0.00)
Location | 3,580,895 – 3,580,995 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 95.30 |
Mean single sequence MFE | -38.55 |
Consensus MFE | -37.12 |
Energy contribution | -38.12 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 0.96 |
SVM decision value | 4.46 |
SVM RNA-class probability | 0.999901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3580895 100 - 22407834 --GC--GUGUGUGGGUGAGAGCGGGAGUAAAGGUGCUCAGAAUACACAGACAAAACGAGUUUGCACCUGGCCAACCUGAAUUUCUCCCGCUCUCCGCUCGCUCU --..--..(.(((((((((((((((((...((((((.(((......(((((.......)))))...)))))..))))......)))))))))).))))))).). ( -41.50) >DroSec_CAF1 48649 100 - 1 --GU--GUGUGUGGGUGAGAGCGGGAGUAAAGGUGCUCAGAAUACACAGACAAAACGAGUUUGCACCUGGCCAACCUGAAUUUCUCCCGCUCUCCGCUCGCUCU --..--..(.(((((((((((((((((...((((((.(((......(((((.......)))))...)))))..))))......)))))))))).))))))).). ( -41.50) >DroSim_CAF1 51373 100 - 1 --GC--GUGUGUGGGUGAGAGCGGGAGUUAAGGUGCUCAGAAUACACAGACAAAACGAGUUUGCACCUGGCCAACCUGAAUUUCUCCCGCUCUCCGCUCGCUCU --..--..(.(((((((((((((((((...((((((.(((......(((((.......)))))...)))))..))))......)))))))))).))))))).). ( -41.50) >DroEre_CAF1 50614 102 - 1 --GUGUGUGUGUGGGUGAGAGCGGGAGUAAAGGCGCUCAAAAUACACAGACAAAACGAGUUUCCACCUGGCCAACCUGAAUUUCUCCCGCUCUCCGCUCGCUCU --......(.(((((((((((((((((...(((.((((..................))))..((....))....)))......)))))))))).))))))).). ( -35.17) >DroYak_CAF1 51200 104 - 1 GCGUGUGUGUGUGGGUGAGAGCGGGAGUAAAGGUGCUCAAAAUACACAGACAAAACGAGUUUGCACCUGGCCAACCUGAAUUUCUCCAGCUCUCCGCUCGCUCU ........(.((((((((((((.((((...((((((..........................))))))((....)).......)))).))))).))))))).). ( -33.07) >consensus __GU__GUGUGUGGGUGAGAGCGGGAGUAAAGGUGCUCAGAAUACACAGACAAAACGAGUUUGCACCUGGCCAACCUGAAUUUCUCCCGCUCUCCGCUCGCUCU ........(.(((((((((((((((((...((((((.(((......(((((.......)))))...)))))..))))......)))))))))).))))))).). (-37.12 = -38.12 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:20 2006