Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 411,940 – 412,060 |
Length | 120 |
Max. P | 0.562664 |
Location | 411,940 – 412,060 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -46.70 |
Consensus MFE | -28.12 |
Energy contribution | -27.35 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.34 |
Mean z-score | -1.65 |
Structure conservation index | 0.60 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 411940 120 - 22407834 AAGCUACUCGUCUCGGGCGACACCAUGGACGUGGUGAAGCAGUCGGCGGCGCUAUGCCUGCUCCGCCUGUUCCGCUCCUCGCCGGACAUCAUUCCCGGUGGUGAGUGGACUUCGCGCAUU ..((..(.(((((.((......))..))))).)((((((.....(((((.((.......)).)))))...(((((((.(((((((.........))))))).)))))))))))))))... ( -54.10) >DroVir_CAF1 4226 120 - 1 AAGCUGCUCGUCUCGGGCGAUACUAUGGAUGUGGUCAAGCAGUCGGCGGCCUUGUGUUUGCUGCGUCUGUUUCGCUCCUCGCCGGAUAUUAUACCCGGCGGUGAGUGGACCUCACGCAUU ..((((((((...))))))..........((.((((((((((.((.((((.........)))))).))))))(((((.(((((((.........))))))).))))))))).)).))... ( -47.60) >DroPse_CAF1 2507 120 - 1 AAACUGCUUGUUUCUGGGGACACCAUGGACGUGGUGAAGCAGUCGGCUGCUCUGUGCCUGCUGCGGCUAUUCCGAUCAUCGCCUGACAUCAUACCCGGCGGCGAGUGGACCUCGCGCAUC ...(..(((((..(((((..((((((....))))))..(((((.(((........))).)))))(((.............)))..........)))))..)))))..)............ ( -45.22) >DroGri_CAF1 2504 120 - 1 AAGCUGCUCGUCUCGGGCGAUACUAUGGAUGUGGUUAAGCAGUCGGCGGCAUUGUGCCUGCUGCGACUGUUUCGUUCAUCGCCAGACAUAAUACCGUUUGGCGAGUGGACAUCGCGAAUU ..((.(((((...)))))((((((((....))))).(((((((((.(((((.......)))))))))))))).((((((((((((((........))))))))).))))))))))..... ( -48.20) >DroWil_CAF1 4638 120 - 1 AAAUUGUUGGUUUCCGGCGAUACAAUGGAUGUGGUAAAGCAAUCGGCUGCAUUAUGUUUAUUGCGUCUAUUUCGCUCAUCGCCAGACAUUAUUCCGGGCGGAGAAUGGACUUCGCGGAUC ....(((((((....(((((...((((((((..((((((((......)))......)))))..)))))))))))))....)))).)))....(((..((((((......))))))))).. ( -36.00) >DroMoj_CAF1 2502 120 - 1 AAGCUGUUGGUGUCGGGCGACACUAUGGAUGUGGUCAAGCAGUCGGCGGCUUUGUGCUUGCUGCGGCUAUUUCGUUCUUCGCCCGAUAUAAUACCUGGCGGCGAGUGGACAUCACGCAUC ..(((((..(((((((((((....(((((.((((((..(((((.((((......)))).))))))))))))))))...))))))))))......)..)))))..(((.......)))... ( -49.10) >consensus AAGCUGCUCGUCUCGGGCGACACUAUGGAUGUGGUCAAGCAGUCGGCGGCAUUGUGCCUGCUGCGGCUAUUUCGCUCAUCGCCAGACAUAAUACCCGGCGGCGAGUGGACAUCGCGCAUC ....((((((...))))))..........(((((....(((((.(((........))).)))))......(((((((.(((((.(.........).))))).)))))))..))))).... (-28.12 = -27.35 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:03 2006