Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,544,637 – 3,544,729 |
Length | 92 |
Max. P | 0.666431 |
Location | 3,544,637 – 3,544,729 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 89.13 |
Mean single sequence MFE | -20.48 |
Consensus MFE | -16.90 |
Energy contribution | -17.62 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.08 |
Mean z-score | -1.47 |
Structure conservation index | 0.83 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3544637 92 + 22407834 GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAACAAUGGCACAUCGGUUUAUCCAUAAAUUAGUUGAAUUGUUUACC ....(..(((.(((((((((((....((((..((.(((((.......))))).)))))).....))))))))))).)))..).......... ( -24.20) >DroSec_CAF1 13585 92 + 1 GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUGAUGGCACUUCGGCUUAUCCAUAAAUUAGUUGAAUUGUUUACC ....(..(((.(((((((((((......((.((.(((.((.(((.....))).))))).)))).))))))))))).)))..).......... ( -24.30) >DroSim_CAF1 13871 92 + 1 GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUAAUGGCACUUCGGCUUAUCCAUAAAUUAGUUGAAUUGUUUACC ....(..(((.(((((((((((.....((....))((((..((((......))))....)))).))))))))))).)))..).......... ( -21.90) >DroEre_CAF1 13876 92 + 1 GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUAAUGGCAUUUCGGUUUAGCCAAAAAUUUGUUGAAUAGUUUACC ....((((((...(((((.((((...)))).)))))....)))))).....((((...........))))...................... ( -14.50) >DroYak_CAF1 14108 81 + 1 GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCGGUUGUGGUCAAAAUAAUGGCUCUUCGGCUUGUGCAUAAAUUGGUUG----------- ((((((.((......)).)).....((((((((.(((((.(((((......)))))...)))))))))))))....)))).----------- ( -17.50) >consensus GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUAAUGGCACUUCGGCUUAUCCAUAAAUUAGUUGAAUUGUUUACC ....((((((.(((((((((((.........(((....)))((((......)))).........))))))))))).)))))).......... (-16.90 = -17.62 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:01 2006