Locus 1337

Sequence ID 2L_DroMel_CAF1
Location 3,542,619 – 3,542,711
Length 92
Max. P 0.820948
window2184

overview

Window 4

Location 3,542,619 – 3,542,711
Length 92
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 92.01
Mean single sequence MFE -28.18
Consensus MFE -22.14
Energy contribution -22.22
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.79
SVM decision value 0.68
SVM RNA-class probability 0.820948
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3542619 92 - 22407834
-GGCGGGGG--AGACCUUCGAGAACAGUGAAAUUCGAGCUGACAAUUGAGUGAGCCCAUCAAUUUGGAAGGUUAAGUUAGCUGGCCUGGGGCAUU
-.((.(((.--...)))((.((..((((..((((..(.((..(((((((.((....)))))).)))..)).)..)))).))))..)).))))... ( -25.90)
>DroSec_CAF1 11586 91 - 1
-GGCG-GGG--AGACCUUCGAGAACAGUGAAAUUUGAGCUGACAAUUGAGUGAGCCCAUCAAUUUGGAUGGUGAAGUUAGCUGGGCUGGGGCAUU
-.(((-((.--...)))((.((..((((..(((((.((((.((......)).)))(((((......)))))).))))).))))..)).))))... ( -29.60)
>DroSim_CAF1 11909 91 - 1
-GGCG-GGG--AGACCUUCGAGAACAGUGAAAUUUGAGCUGACAAUUGAGUGAGCCCAUCAAUUUGGAUGGUGAAGUUAGCUGGGCUGGGGCAUU
-.(((-((.--...)))((.((..((((..(((((.((((.((......)).)))(((((......)))))).))))).))))..)).))))... ( -29.60)
>DroEre_CAF1 11860 91 - 1
-GGCG-GGG--AAACCUUCGAGAACAGUGAAAUUCGAGCUGACAAUUGAGUGAGCCCAUCAAUUUGGUAGGUUGAGUGAACUGGGCAGGGGCAUU
-.(((-((.--...)))....(..((((...((((((.(((..((((((.((....))))))))...))).))))))..))))..)....))... ( -27.30)
>DroYak_CAF1 12029 94 - 1
GGGCG-GGGAGAGACCUUCGAGAACAGUGAAAUUCGAGCUGACAAUUGAGUGAGCCCAUCAAUUUGGAGGGUUGAAUGAACUGGGCUGGGGCAUU
..(((-((......)))((.((..((((...((((((.((..(((((((.((....)))))).)))..)).))))))..))))..)).))))... ( -28.50)
>consensus
_GGCG_GGG__AGACCUUCGAGAACAGUGAAAUUCGAGCUGACAAUUGAGUGAGCCCAUCAAUUUGGAAGGUUAAGUUAGCUGGGCUGGGGCAUU
..((..((......)).((.((..((((...(((((((((.((......)).)))(((......)))....))))))..))))..)).))))... (-22.14 = -22.22 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:59 2006