Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,540,969 – 3,541,060 |
Length | 91 |
Max. P | 0.581362 |
Location | 3,540,969 – 3,541,060 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 86.82 |
Mean single sequence MFE | -20.04 |
Consensus MFE | -14.14 |
Energy contribution | -13.66 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.26 |
Mean z-score | -1.75 |
Structure conservation index | 0.71 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3540969 91 - 22407834 UCCUACUUCCAGAAAGUUCC--CCUAGAAUAUGGGUUCUGAUUUCUGCGAUUUCGCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC ...........(((((((((--((((.....)))).((((.....((((....)))).))))......)))))))))(((....)))...... ( -22.80) >DroSec_CAF1 9942 91 - 1 UCUUACUUCUGGAAAGUUCC--CCUGGAAUAUGGGUUCUGAGUUCUCCGUUUUCCCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC ...(((((.(((((((((((--....((((.((((..(.((....)).)....))))....))))...))))))))).)).)))))....... ( -23.00) >DroSim_CAF1 10268 91 - 1 UCUUACUUCUGGAAAGUUCC--CCUGGAAUAUGGGUUCUGAGUUCUCCGUUUUCCCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC ...(((((.(((((((((((--....((((.((((..(.((....)).)....))))....))))...))))))))).)).)))))....... ( -23.00) >DroEre_CAF1 10222 88 - 1 U---ACUUCUAGAAAGUUCC--CCUGGAAUAUGCGUUCUGAUUUCUCCGAUUUCCCACCCGGUUCAUUGGAAUUUUCGCACAAGUGUUAACUC (---((((...(((((((((--..((((...((.((...((..((...))..))..)).)).))))..)))))))))....)))))....... ( -16.60) >DroYak_CAF1 10332 93 - 1 UCCCACUUCUAGAAAGUUUUUUUUUGGAAUAUGCGUUCUGAAUUCUCCGUUUUCCCACCCCAUUCAUUGGAAUUUUCGCACAAGUGUUAACUA ...(((((...(((((((....((..((((....))))..)).................(((.....))))))))))....)))))....... ( -14.80) >consensus UCCUACUUCUAGAAAGUUCC__CCUGGAAUAUGGGUUCUGAGUUCUCCGUUUUCCCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC ...........(((((((((......((((.(((.....((((.....)))).....))).))))...)))))))))(((....)))...... (-14.14 = -13.66 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:58 2006