Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,533,281 – 3,533,398 |
Length | 117 |
Max. P | 0.729434 |
Location | 3,533,281 – 3,533,398 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 75.13 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -11.18 |
Energy contribution | -11.62 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.87 |
Structure conservation index | 0.36 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3533281 117 - 22407834 GCUUGCGGUUGCACUGCAA-AAAAAUGUGUUGAUUUAGAAUUGGUUUCAUAUUUCUAGAGCAAUGCUUAUUGUAGAAGUGUCGCUUUUAGUUCACAGGCUGAUUAGCCAAGCGCAACC ......((((((.((((((-......((((((.(((((((.((......)).))))))).))))))...))))))..((...(((.(((((......)))))..)))...)))))))) ( -33.00) >DroSec_CAF1 2392 117 - 1 GCUUGCGGUUGCACUGCAA-GAAAAUGUGUUGACUUAGAAUUGGUUACAUAUUUCUAGGGCAAUGGUUAUUUUAGAAGUGUAGCUUUUAGUUCACAGGCUGACUAGCCAAGCGCAACA .(((((((.....))))))-)....((((((..(((((((.((....))...)))))))....((((((..((((..(((.(((.....))))))...)))).))))))))))))... ( -34.60) >DroSim_CAF1 2455 117 - 1 GCUUGCGGUUGCACUGCAA-GAAAAUGUGUUGACUUAGAAUUGGUUUCAUAUUUCUAGGGCAAUGCUUAUUUCAGUAGUGUAGCUUUUAGUUCACAGGCUGACUAGCCAAGCGCAACA ..(((((((((((((((..-((((..((((((.(((((((.((......)).))))))).))))))...)))).))))))))))............((((....))))...))))).. ( -39.20) >DroEre_CAF1 2332 93 - 1 GCUUGCGGUUGCACUGCAACAAAAAUCGCUGGAUUUACUAU-------GC------------AUGCCUAUGCUAGAAAUGUCGCUUUUCGUUCAAAGGCUGACCAGCCAA------AA ..((((((.....))))))........(((((((((.(((.-------((------------((....)))))))))))...((((((.....))))))...)))))...------.. ( -24.20) >DroYak_CAF1 2436 105 - 1 GCGUGCGGUUGCACUGCAA-AAAAAUCUGUUGAUUUAGUAUUGGUUUUAC------------AUGCUCAUUUAAGAUCCAUUGCUUUUAGUUCAAAGGCUGACUAGUCAAGCUCAGAA ((((((....)))).))..-.....((((((((...((((.((((((((.------------((....)).))))).))).))))......)))).((((((....)).)))))))). ( -23.60) >consensus GCUUGCGGUUGCACUGCAA_AAAAAUGUGUUGAUUUAGAAUUGGUUUCAUAUUUCUAG_GCAAUGCUUAUUUUAGAAGUGUAGCUUUUAGUUCACAGGCUGACUAGCCAAGCGCAACA ((((((((.....))))...............................................................................((((....))))))))...... (-11.18 = -11.62 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:57 2006