Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,528,963 – 3,529,063 |
Length | 100 |
Max. P | 0.999994 |
Location | 3,528,963 – 3,529,063 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 94.87 |
Mean single sequence MFE | -40.73 |
Consensus MFE | -41.03 |
Energy contribution | -40.62 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.07 |
Mean z-score | -2.82 |
Structure conservation index | 1.01 |
SVM decision value | 5.79 |
SVM RNA-class probability | 0.999994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3528963 100 + 22407834 UGGUCAGCAAGAACAGGCCGUAGCUGGUGAGGCUCAGCAACUUAUUGCCGAGCGAUGCCAGCGCGGUGUCGACCAAGAGGGGCAACUCAUACUUGCAGAA ......(((((.....(((((.(((((((..((((.((((....)))).))))..))))))))))))...........(((....)))...))))).... ( -40.80) >DroSec_CAF1 37976 100 + 1 UGGUCAGCAAGAACAGGCCGUAGCUGGUGAGGCUCAGCAACUUAUUGCCGAGCGAUGCCAGCGCGGUGUCGAGCAAGAGGGGCAACUCAUACUUGCAGAA ......(((((.....(((((.(((((((..((((.((((....)))).))))..))))))))))))...........(((....)))...))))).... ( -40.80) >DroSim_CAF1 39641 100 + 1 UGGUCAGCAAGAACAGGCCGUAGCUGGUGAGGCUCAGCAACUUAUUGCCGAGCGAUGCCAGCGCGGUGUCGACCAAGAGGGGCAACUCAUACUUGCAGAA ......(((((.....(((((.(((((((..((((.((((....)))).))))..))))))))))))...........(((....)))...))))).... ( -40.80) >DroEre_CAF1 39084 100 + 1 UGGUCAGCAAGAACAGGCCGUAGCUGGUGAGGCUUAGCAACUUAUUGCCAAGCGAUGCCAGCGCGGUGUCGACCAAGAGGGGCAACUCAUACUUGCAGAA ......(((((.....(((((.(((((((..((((.((((....)))).))))..))))))))))))...........(((....)))...))))).... ( -38.60) >DroYak_CAF1 37533 100 + 1 UGGUCAGCAAGAACAGGCCGUAGCUGGUGAGGCUCAGCAACUUAUUGCCGAGCGAUGCCAGCGCGGUGUCGACCAAUAGGGGCAACUCAUACUUGCAGAA ......(((((.....(((((.(((((((..((((.((((....)))).))))..))))))))))))...........(((....)))...))))).... ( -40.80) >DroAna_CAF1 34192 100 + 1 UGGCCAGCAAGAACAGGCCGUAGCUGGUGAAGCUCAGCAGGGUAUUGCCGAGCGAUGCCAGCGCGGUGUCGAUGCGUUGGGGCAACUCAUACUUGCAAAA ......(((((.....(((((.(((((((..((((.((((....)))).))))..))))))))))))..........((((....))))..))))).... ( -42.60) >consensus UGGUCAGCAAGAACAGGCCGUAGCUGGUGAGGCUCAGCAACUUAUUGCCGAGCGAUGCCAGCGCGGUGUCGACCAAGAGGGGCAACUCAUACUUGCAGAA ......(((((.....(((((.(((((((..((((.((((....)))).))))..))))))))))))...........(((....)))...))))).... (-41.03 = -40.62 + -0.41)
Location | 3,528,963 – 3,529,063 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 94.87 |
Mean single sequence MFE | -36.62 |
Consensus MFE | -34.62 |
Energy contribution | -34.73 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -2.56 |
Structure conservation index | 0.95 |
SVM decision value | 4.16 |
SVM RNA-class probability | 0.999821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3528963 100 - 22407834 UUCUGCAAGUAUGAGUUGCCCCUCUUGGUCGACACCGCGCUGGCAUCGCUCGGCAAUAAGUUGCUGAGCCUCACCAGCUACGGCCUGUUCUUGCUGACCA .((.(((((.((..((((((......)).)))).(((.(((((....(((((((((....)))))))))....)))))..)))...)).))))).))... ( -37.40) >DroSec_CAF1 37976 100 - 1 UUCUGCAAGUAUGAGUUGCCCCUCUUGCUCGACACCGCGCUGGCAUCGCUCGGCAAUAAGUUGCUGAGCCUCACCAGCUACGGCCUGUUCUUGCUGACCA .((.(((((...((((..........))))(((((((.(((((....(((((((((....)))))))))....)))))..)))..))))))))).))... ( -36.60) >DroSim_CAF1 39641 100 - 1 UUCUGCAAGUAUGAGUUGCCCCUCUUGGUCGACACCGCGCUGGCAUCGCUCGGCAAUAAGUUGCUGAGCCUCACCAGCUACGGCCUGUUCUUGCUGACCA .((.(((((.((..((((((......)).)))).(((.(((((....(((((((((....)))))))))....)))))..)))...)).))))).))... ( -37.40) >DroEre_CAF1 39084 100 - 1 UUCUGCAAGUAUGAGUUGCCCCUCUUGGUCGACACCGCGCUGGCAUCGCUUGGCAAUAAGUUGCUAAGCCUCACCAGCUACGGCCUGUUCUUGCUGACCA .((.(((((.((..((((((......)).)))).(((.(((((....(((((((((....)))))))))....)))))..)))...)).))))).))... ( -35.50) >DroYak_CAF1 37533 100 - 1 UUCUGCAAGUAUGAGUUGCCCCUAUUGGUCGACACCGCGCUGGCAUCGCUCGGCAAUAAGUUGCUGAGCCUCACCAGCUACGGCCUGUUCUUGCUGACCA .((.(((((.((..((((((......)).)))).(((.(((((....(((((((((....)))))))))....)))))..)))...)).))))).))... ( -37.40) >DroAna_CAF1 34192 100 - 1 UUUUGCAAGUAUGAGUUGCCCCAACGCAUCGACACCGCGCUGGCAUCGCUCGGCAAUACCCUGCUGAGCUUCACCAGCUACGGCCUGUUCUUGCUGGCCA ....((..(((((.((((...)))).)))..))...))(((((....((((((((......))))))))....)))))...((((.((....)).)))). ( -35.40) >consensus UUCUGCAAGUAUGAGUUGCCCCUCUUGGUCGACACCGCGCUGGCAUCGCUCGGCAAUAAGUUGCUGAGCCUCACCAGCUACGGCCUGUUCUUGCUGACCA .((.(((((.((..((((.((.....)).)))).(((.(((((....(((((((((....)))))))))....)))))..)))...)).))))).))... (-34.62 = -34.73 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:56 2006