Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,519,747 – 3,519,847 |
Length | 100 |
Max. P | 0.783959 |
Location | 3,519,747 – 3,519,847 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.70 |
Mean single sequence MFE | -38.46 |
Consensus MFE | -27.68 |
Energy contribution | -30.16 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.07 |
Mean z-score | -1.80 |
Structure conservation index | 0.72 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3519747 100 + 22407834 UCCCGGAGAACUGGAUUGGGAUCGAGGACUUGCUUUGUCGAGGUGGAUUACCGGAGUCCUCCCUCCCAGGAUGGUCAGGAAUGUGUCCUUCGGGAGGAGU (((((((((.(((..((((((..(((((((((((((...)))))((....)).))))))))..))))))..))))).(((.....))))))))))..... ( -39.10) >DroSec_CAF1 28745 100 + 1 UCCCGGAAAACUGGAUUGGGAUCGAGGACUUGCUUCGUCGAGGUGGAUUGGCGGAGUCCUCGCUCACAGGAUGAUAAGGAAAGUGUCCUUCGGGAGGAAU (((((((...(((...((((..(((((((((....((((((......))))))))))))))))))))))........(((.....))))))))))..... ( -36.20) >DroSim_CAF1 28692 100 + 1 UCCCGGAGAACUGGAUUGGGAUCGAGGACUUGCUUAGUCGAGGUGGAUUGGCGGAGUCCUCGCUCCCAGGAUGAUAAGAAAAGUGUCCUGCGGGAGGAAU (((((.((.......((((((.((((((((((((.((((......))))))).))))))))).))))))...((((.......)))))).)))))..... ( -41.90) >DroEre_CAF1 26623 100 + 1 UCCCGGAGCACUGGAUUGGGCACCAGGAGCUGCUUCAUCGACUUUGAGUGGCGGAGUCCUCGCUCCCAGGAUGGGCAAGGGAGUGUCCUUAGGGAGGAAU ((((((((((((((........))))....))))))...(((((((.....)))))))..(((((((..(.....)..)))))))......))))..... ( -35.30) >DroYak_CAF1 28100 100 + 1 UCCCGGAGCACUAUGUUGGGCACGAGGAGCUGCUUCGUCAACGUGGAGUGGCGACAUCCUAGCUCCCAGGAUGGUCAAGAGAGUGUCCUUAGGGAGGAGU (((((((((.((((((((...((((((.....)))))))))))))).(((....)))....))))).((((((.((....)).))))))..))))..... ( -39.80) >consensus UCCCGGAGAACUGGAUUGGGAUCGAGGACUUGCUUCGUCGAGGUGGAUUGGCGGAGUCCUCGCUCCCAGGAUGGUCAGGAAAGUGUCCUUCGGGAGGAAU (((((((.........(((((.((((((((((((...((......))..))).))))))))).)))))((((............)))))))))))..... (-27.68 = -30.16 + 2.48)
Location | 3,519,747 – 3,519,847 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.70 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -19.76 |
Energy contribution | -22.68 |
Covariance contribution | 2.92 |
Combinations/Pair | 1.07 |
Mean z-score | -2.03 |
Structure conservation index | 0.66 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3519747 100 - 22407834 ACUCCUCCCGAAGGACACAUUCCUGACCAUCCUGGGAGGGAGGACUCCGGUAAUCCACCUCGACAAAGCAAGUCCUCGAUCCCAAUCCAGUUCUCCGGGA .....(((((.(((((.((....)).......(((((..(((((((..(((.....)))..(......).)))))))..))))).....))))).))))) ( -33.10) >DroSec_CAF1 28745 100 - 1 AUUCCUCCCGAAGGACACUUUCCUUAUCAUCCUGUGAGCGAGGACUCCGCCAAUCCACCUCGACGAAGCAAGUCCUCGAUCCCAAUCCAGUUUUCCGGGA .....((((((((((.....))))).......((.((.((((((((..((...((......))....)).)))))))).)).))...........))))) ( -27.30) >DroSim_CAF1 28692 100 - 1 AUUCCUCCCGCAGGACACUUUUCUUAUCAUCCUGGGAGCGAGGACUCCGCCAAUCCACCUCGACUAAGCAAGUCCUCGAUCCCAAUCCAGUUCUCCGGGA .....(((((.(((((..(......)......(((((.((((((((..((...((......))....)).)))))))).))))).....))))).))))) ( -32.60) >DroEre_CAF1 26623 100 - 1 AUUCCUCCCUAAGGACACUCCCUUGCCCAUCCUGGGAGCGAGGACUCCGCCACUCAAAGUCGAUGAAGCAGCUCCUGGUGCCCAAUCCAGUGCUCCGGGA .....((((...(((((((.((((((((......)).))))))..................(((...(((.(....).)))...))).)))).))))))) ( -28.80) >DroYak_CAF1 28100 100 - 1 ACUCCUCCCUAAGGACACUCUCUUGACCAUCCUGGGAGCUAGGAUGUCGCCACUCCACGUUGACGAAGCAGCUCCUCGUGCCCAACAUAGUGCUCCGGGA .....((((...(((((((.(.(((..(((...(((((((.(((.((....)))))..(((.....)))))))))).)))..))).).)))).))))))) ( -28.80) >consensus AUUCCUCCCGAAGGACACUUUCCUGACCAUCCUGGGAGCGAGGACUCCGCCAAUCCACCUCGACGAAGCAAGUCCUCGAUCCCAAUCCAGUUCUCCGGGA .....(((((.(((((.(......).......(((((.((((((((..((...((......))....)).)))))))).))))).....))))).))))) (-19.76 = -22.68 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:48 2006