Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 404,481 – 404,612 |
Length | 131 |
Max. P | 0.708082 |
Location | 404,481 – 404,572 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 76.42 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -13.43 |
Energy contribution | -13.98 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.26 |
Mean z-score | -1.70 |
Structure conservation index | 0.56 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 404481 91 + 22407834 CAAUCUUGUACCUAUAGCAAGGUU-UCGUGCUAAUAGAUUUACUUCUAUGGCUAGCAUUUGGCCAAUUUGGGAGGUCCACAUGUGGAUUCCU .....((((.......))))((((-..(((((((((((......)))))...))))))..)))).....(((((.((((....))))))))) ( -24.90) >DroVir_CAF1 86 79 + 1 --GU----UGCCUGCCGCCAAGUAUAGACUUUAAUGUAAU-----ACUU--GCAGCAUCUGGCCAAUUUGGGUGCACCACAUGUGGACUCUU --..----.((((((.((.((((((..((......)).))-----))))--)).)))...)))......((((.(((.....))).)))).. ( -21.40) >DroSec_CAF1 99 91 + 1 CAAACUUGUACCUACAGCCAGGUG-UCGUGCUAAUAAAUUUCCCUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCUCAUGUGGAUUCCU ((((..(((....)))((((((((-(...((((...............))))..)))))))))...))))((((.(((......))))))). ( -24.96) >DroSim_CAF1 99 91 + 1 CAAACUUGUACCUACAGCCAGGUG-UAGUGCUAAUAAAUUUCCCUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCUCAUGUGGAUUCCU ((((..(((....)))((((((((-(...((((...............))))..)))))))))...))))((((.(((......))))))). ( -24.96) >DroEre_CAF1 99 91 + 1 CAAUUUUGUACCUGCCGUGCGGUU-UCGUGCUAAUACAUUUCUGUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCACAUGUGGAUUCCU .......((((.....))))((((-..((((((...(((........)))..))))))..)))).....(((((.((((....))))))))) ( -25.30) >DroYak_CAF1 99 91 + 1 AAAUUUUGUACCCACCGUACGGUU-UCGUGCUCAUACACUUCUUUCUAUGGCUAGCAUUUGGCCAACUUGGGAGCUCCACAUGUGGAUUCCU .......((.((((..(((((...-.))))).................(((((((...)))))))...)))).))((((....))))..... ( -22.90) >consensus CAAUCUUGUACCUACAGCCAGGUU_UCGUGCUAAUAAAUUUCCCUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCACAUGUGGAUUCCU .........((((......)))).........................(((((((...)))))))....(((((.(((......)))))))) (-13.43 = -13.98 + 0.56)
Location | 404,511 – 404,612 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.04 |
Mean single sequence MFE | -31.57 |
Consensus MFE | -22.24 |
Energy contribution | -23.10 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.25 |
Mean z-score | -1.71 |
Structure conservation index | 0.70 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 404511 101 + 22407834 UAAUAGAUUUACUUCUAUGGCUAGCAUUUGGCCAAUUUGGGAGGUCCACAUGUGGAUUCCUUCGACGAGAUGCUGACCGUGGGACUGGAUAACUCGGCCAA ......(((((.((((((((.((((((((.(.(.....(((((.((((....)))))))))..).).)))))))).)))))))).)))))........... ( -31.90) >DroVir_CAF1 111 94 + 1 UAAUGUAAU-----ACUU--GCAGCAUCUGGCCAAUUUGGGUGCACCACAUGUGGACUCUUUUGAUGAAAUGCUCAGCGUGGGCCUGGAGCAUGUGGCCAG ...((((..-----...)--)))....(((((((....((((.(((.....))).))))..........((((((.((....))...)))))).))))))) ( -30.10) >DroSec_CAF1 129 101 + 1 UAAUAAAUUUCCCUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCUCAUGUGGAUUCCUUCGACGAGAUGCUAACCGUGGGACUGGAUUACUCCGCCAA .........((((...((((.((((((((.(.(.....(((((.(((......))))))))..).).)))))))).))))))))..(((....)))..... ( -32.30) >DroSim_CAF1 129 101 + 1 UAAUAAAUUUCCCUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCUCAUGUGGAUUCCUUCGACGAGAUGCUGACCGUGGGACUGGAUUACUCGGCCAA .........(((.(((((((.((((((((.(.(.....(((((.(((......))))))))..).).)))))))).)))))))...)))............ ( -31.60) >DroEre_CAF1 129 101 + 1 UAAUACAUUUCUGUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCACAUGUGGAUUCCUUUGACGAGAUGUUGACCUUGGGACUGGAUAACACGGCCAA ....(((((((.(((..(((((((...)))))))....(((((.((((....)))))))))..))))))))))........((.(((.......))))).. ( -32.30) >DroYak_CAF1 129 101 + 1 UCAUACACUUCUUUCUAUGGCUAGCAUUUGGCCAACUUGGGAGCUCCACAUGUGGAUUCCUUUGACGAGAUGCUGACCUUGGGACUGGAUAACGUGGCCAA .....(((.((((((((.((.((((((((.(.(((...(((((.((((....)))))))))))).).)))))))).)).)))))..)))....)))..... ( -31.20) >consensus UAAUAAAUUUCCCUCUAUGGCUAGCAUCUGGCCAAUUUGGGAGCUCCACAUGUGGAUUCCUUCGACGAGAUGCUGACCGUGGGACUGGAUAACUCGGCCAA .............(((((((.((((((((.(.(.....(((((.(((......))))))))..).).)))))))).)))))))..(((.........))). (-22.24 = -23.10 + 0.86)
Location | 404,511 – 404,612 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.04 |
Mean single sequence MFE | -28.65 |
Consensus MFE | -19.42 |
Energy contribution | -20.95 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.12 |
Mean z-score | -1.60 |
Structure conservation index | 0.68 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 404511 101 - 22407834 UUGGCCGAGUUAUCCAGUCCCACGGUCAGCAUCUCGUCGAAGGAAUCCACAUGUGGACCUCCCAAAUUGGCCAAAUGCUAGCCAUAGAAGUAAAUCUAUUA (((((((((((..((........))..)))...........(((.((((....))))..)))....)))))))).........(((((......))))).. ( -24.00) >DroVir_CAF1 111 94 - 1 CUGGCCACAUGCUCCAGGCCCACGCUGAGCAUUUCAUCAAAAGAGUCCACAUGUGGUGCACCCAAAUUGGCCAGAUGCUGC--AAGU-----AUUACAUUA (((((((.((((((..(((....)))))))))............(((((....))).))........)))))))((((...--..))-----))....... ( -25.60) >DroSec_CAF1 129 101 - 1 UUGGCGGAGUAAUCCAGUCCCACGGUUAGCAUCUCGUCGAAGGAAUCCACAUGAGGAGCUCCCAAAUUGGCCAGAUGCUAGCCAUAGAGGGAAAUUUAUUA .....(((....)))..((((.((((((((((((.(((((.(((.(((......)))..)))....))))).)))))))))))...).))))......... ( -38.50) >DroSim_CAF1 129 101 - 1 UUGGCCGAGUAAUCCAGUCCCACGGUCAGCAUCUCGUCGAAGGAAUCCACAUGAGGAGCUCCCAAAUUGGCCAGAUGCUAGCCAUAGAGGGAAAUUUAUUA .......(((((.....((((.(((..(((((((.(((((.(((.(((......)))..)))....))))).)))))))..))...).))))...))))). ( -31.80) >DroEre_CAF1 129 101 - 1 UUGGCCGUGUUAUCCAGUCCCAAGGUCAACAUCUCGUCAAAGGAAUCCACAUGUGGAGCUCCCAAAUUGGCCAGAUGCUAGCCAUAGACAGAAAUGUAUUA ((((((.((..((...))..)).))))))(((((.(((((.(((.((((....))))..)))....))))).)))))(((....)))(((....))).... ( -26.30) >DroYak_CAF1 129 101 - 1 UUGGCCACGUUAUCCAGUCCCAAGGUCAGCAUCUCGUCAAAGGAAUCCACAUGUGGAGCUCCCAAGUUGGCCAAAUGCUAGCCAUAGAAAGAAGUGUAUGA ((((..((........)).))))((..(((((...(((((.(((.((((....))))..)))....)))))...)))))..)).................. ( -25.70) >consensus UUGGCCGAGUUAUCCAGUCCCACGGUCAGCAUCUCGUCAAAGGAAUCCACAUGUGGAGCUCCCAAAUUGGCCAGAUGCUAGCCAUAGAAGGAAAUGUAUUA ((((.........))))......(((.(((((((.(((((.(((.((((....))))..)))....))))).))))))).))).................. (-19.42 = -20.95 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:02 2006