Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,518,778 – 3,518,877 |
Length | 99 |
Max. P | 0.689157 |
Location | 3,518,778 – 3,518,877 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.04 |
Mean single sequence MFE | -33.16 |
Consensus MFE | -14.19 |
Energy contribution | -15.42 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.19 |
Mean z-score | -2.20 |
Structure conservation index | 0.43 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.689157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3518778 99 + 22407834 AUACCGGCUGC---U---UCUUGCA---GCUCAUUAUAGCGCAGGCGAUCUCUUCGAUCAUCUUCUUGUCCUCAGGACAAGCGCCCUUCAUCUUCUGCAUGGCCUUUU ...((((((((---.---....)))---))).........(((((.((((.....)))).....(((((((...)))))))............)))))..))...... ( -28.90) >DroVir_CAF1 29780 105 + 1 AGAUUUGCUUUGGCUUGGACUUGGA---GGCCAUAAUGGCGCAGGCGAUUUCCUGCAUCAUUUUCAUGUCCUCCGGGCAGGCGCCCUUCAUUUUCUGCAUGGCCUUGU ......((...((((.(((...(((---((.(((((((..(((((......)))))..))))...))).)))))((((....)))).......)))....))))..)) ( -35.70) >DroPse_CAF1 38910 99 + 1 AUACGGGCUUG---U---UUUUGCA---GGCCAUGAUCGCAGCUGCAAUCUCUUGCAUCAUCCGCUUGUCUUCCGGACAGGCGCCCUUCAUCUUCUGCAUGGCCUUCU ....(((((..---.---...((((---((..((((..((.(.(((((....))))).)....(((((((.....)))))))))...))))..)))))).)))))... ( -33.90) >DroGri_CAF1 45820 105 + 1 AAACGUGCUUCGGCUUGGACUUGGA---GGCCAUGAUGGCGCAGGCGAUGUUUUGCAUCAUUUUCAAGUCCUCGGGGCAGGCGCCCUUCAUCUUUUGCAUGGCCUUGC ...(((((........(((((((((---((((.((......)))))((((.....))))..))))))))))..(((((....))))).........)))))....... ( -37.00) >DroMoj_CAF1 29997 105 + 1 AGACCUGCUUCGGCUUGGACUUGGA---GGCCAUUAUGGCGCAGGCGAUUUCCUGCAUCAUUUUCAUGUCCUCCGGACAGGCGCCCUUCAUCUUCUGCAUGGCCUUGC .(.((((.(((((...((((.((((---((((.....)))(((((......))))).....))))).)))).))))))))))(((...((.....))...)))..... ( -37.30) >DroAna_CAF1 23556 102 + 1 AAGUCGGCUUC---U---UUUUGGAUGCACCCAUAAUGGCGCAAGCGAUCUCCUCAAUCAUUUUCUUGUCCUCCGGACAGGCGCCCUUCAUCUUCUUCAUGGCCGUUU ....(((((..---.---....(((((.......((.(((((....(((.......)))......((((((...))))))))))).))))))).......)))))... ( -26.15) >consensus AAACCGGCUUC___U___ACUUGGA___GGCCAUAAUGGCGCAGGCGAUCUCCUGCAUCAUUUUCAUGUCCUCCGGACAGGCGCCCUUCAUCUUCUGCAUGGCCUUGU ............................((((((((.(((((....(((.......))).......(((((...))))).))))).))..........)))))).... (-14.19 = -15.42 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:46 2006