Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,501,459 – 3,501,571 |
Length | 112 |
Max. P | 0.835841 |
Location | 3,501,459 – 3,501,571 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -20.83 |
Energy contribution | -20.00 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.38 |
Mean z-score | -1.48 |
Structure conservation index | 0.70 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3501459 112 - 22407834 AAUAU-------UACAGGUUUGCCACGCUGGAGGUGAUGCACUACUAUGGCAUUCUGUUGGAGGACUUCAACAACAACGGAGAGUUUGUCAAUGACUGCAUCUUCACCAUGAUGCAUCA .....-------.(((..(((((((...(((.((((...)))).)))))))..(((((((..(........)..))))))))))..)))...(((.((((((........))))))))) ( -29.80) >DroVir_CAF1 8185 119 - 1 UUUGUUAACCCUAACAGAUUUGCCACCUUGGAGGUGAUGCACUACUAUGGCAUUCUCUUGGAGGACUUCAGCAACAAUGGCGAAUAUGUCAACGACUGCAUCUUUACCAUGAUGCAUCA .((((((....))))))((((((((((((.(((..(((((.(......))))))..))).)))).............))))))))........((.((((((........)))))))). ( -34.51) >DroGri_CAF1 26512 118 - 1 UUUGCUU-GCUUAUCAGAUUCGCCACUUUGGAGGUGAUGCACUACUAUGGUAUUCUGCUGGAGGAUUUUAAUAAUAAUGGCGAGUUUGUUAACGACUGCAUCUUUACUAUGAUGCAUCA .......-..(((.((((((((((((((..(.((.(((((.(......)))))))).)..))).(((.....)))..))))))))))).))).((.((((((........)))))))). ( -33.00) >DroWil_CAF1 32661 112 - 1 CUUUU-------UUUAGAUUUGCCACCCUGGAAGUGAUGCAUUAUUAUGGCAUUCUUUUGGAGGAUUUCAAUAAUAAUGGUGAAUUUGUUAAUGAUUGUAUAUUCACAAUGAUGCAUCA .....-------..((((((..((((((..((((.(((((.........)))))))))..).))(((.....)))..)))..))))))...((.(((((......))))).))...... ( -24.00) >DroMoj_CAF1 9299 119 - 1 UCUGCUACUCCCACUAGAUUUGCCACUCUGGAGGUAAUGCACUACUAUGGCAUUCUCCUGGAGGACUUUGAUAACAAUGGCGAGUUCGUCAACGAUUGCAUCUUUACCAUGAUGCACCA .................(((((((((((..(..(.(((((.(......)))))))..)..)))....(((....)))))))))))(((....))).((((((........))))))... ( -31.40) >DroAna_CAF1 6492 113 - 1 GUUAU------UUUUAGGUUCGCCACGUUAGAGGUAAUGCACUAUUAUGGUAUCCUCCUGGAGGACUUCAGCAACAACGGAGAAUUCGUCAAUGACUGUAUCUUUACCAUGAUGCAUCA (((((------(..(..((((.((......((((..((((.(......)))))))))(((((....))))).......)).))))..)..))))))((((((........))))))... ( -26.70) >consensus UUUGU______UAUCAGAUUUGCCACCCUGGAGGUGAUGCACUACUAUGGCAUUCUCCUGGAGGACUUCAACAACAAUGGCGAAUUUGUCAACGACUGCAUCUUUACCAUGAUGCAUCA ..............(((((((((((.....(((((.((((.(......)))))(((.....))))))))........))))))))))).....((.((((((........)))))))). (-20.83 = -20.00 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:44 2006