Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,498,419 – 3,498,513 |
Length | 94 |
Max. P | 0.700384 |
Location | 3,498,419 – 3,498,513 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -34.98 |
Consensus MFE | -30.44 |
Energy contribution | -30.08 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.07 |
Mean z-score | -1.49 |
Structure conservation index | 0.87 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3498419 94 + 22407834 UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGAAGGAGCAGCUAGCUCCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG (((((.....)))))....(((.(((.((((((.........((....))((((((.((.(((....))))).)))))).)))))).)))))). ( -36.50) >DroSec_CAF1 7380 94 + 1 UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUCCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG (((((.....)))))....(((.(((.((((((...((......))....((((((.((.(((....))))).)))))).)))))).)))))). ( -36.50) >DroSim_CAF1 7424 94 + 1 UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUGCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG (((((.....)))))....(((.(((.((((((...((......))....(((((((.((((....)))).).)))))).)))))).)))))). ( -35.70) >DroEre_CAF1 5290 94 + 1 UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUCCACCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG (((((.....)))))....(((.(((.((((((...((......))....((((((.(((((....).)))).)))))).)))))).)))))). ( -33.50) >DroYak_CAF1 5325 94 + 1 UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGGAAAAUCGCAGGAGCAGCUAGCUCCACCAGCGGGUGAGCUCCAUCUGAUCGUGUGGG (((((.....)))))....(((.(((.((((((...(((...((((.(((((.....))))).((...))))))..))).)))))).)))))). ( -32.70) >consensus UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUCCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG (((((.....)))))....(((.(((.((((((...(((...((...(((((.....)))))(((....)))))..))).)))))).)))))). (-30.44 = -30.08 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:43 2006