Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,481,938 – 3,482,042 |
Length | 104 |
Max. P | 0.584151 |
Location | 3,481,938 – 3,482,042 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -24.65 |
Consensus MFE | -19.65 |
Energy contribution | -21.90 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.58 |
Structure conservation index | 0.80 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3481938 104 + 22407834 AAUUUCUUCAGGAAGGUGAUCAAAUGAGUAAUUCAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA ..((((....))))((((.(((.((((((((((((....(....).....((..((((((((.....))))))))..)).)).)))))))))).)))))))... ( -27.30) >DroSim_CAF1 9139 104 + 1 GAUUUCUUAAGGAUGGUGAUCAAAUGAGUAAUUAAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA .............(((((.(((.(((((((((((.....(....).....((..((((((((.....))))))))..))...))))))))))).)))))))).. ( -27.90) >DroEre_CAF1 9444 103 + 1 GAUUUCUUUAGGAAGUUAAUCAAAUGAGUAAUUA-AUGGGGAGACAUAAAGUUGGUCGGCGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA ((((((.....))))))..(((.(((((((((((-(((.(....).......(((((((.((.....)).))))).))))).))))))))))).)))....... ( -20.60) >DroYak_CAF1 9220 104 + 1 GAUUUCUUCAGGAAGGCGAUCAAAUGUGUAAUUAAAUGGGGAGACACAAAGUUGGUGGGGGGAUUUAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA (((.((..((...(((((((...((((((.......((.(....).))......((.((((.......)))).))))))))...))))))).)).)).)))... ( -22.80) >consensus GAUUUCUUCAGGAAGGUGAUCAAAUGAGUAAUUAAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA ..............((((.(((.(((((((((((.(((.(....).......((((((((((.....)))))))).))))).))))))))))).)))))))... (-19.65 = -21.90 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:39 2006