Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,481,131 – 3,481,239 |
Length | 108 |
Max. P | 0.701718 |
Location | 3,481,131 – 3,481,239 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -49.93 |
Consensus MFE | -31.29 |
Energy contribution | -31.32 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.23 |
Mean z-score | -2.24 |
Structure conservation index | 0.63 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3481131 108 - 22407834 GGCUAAUUCCUUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCCAGAUCCCAGGGUGGUGCAUCGGGAGGGGAUGCCAUUGCCUUGGGAUCGGGCGGCCUGGGCUU (((.......(((((((((...)))))))))...))).....((((.((((((((((..(((((((.......)))).)))..))))))))))))))(((....))). ( -58.20) >DroPse_CAF1 9993 102 - 1 GGCCAAUUCCUUGCUCCUCGAGCAGCAGUCCCUUUCUAUCCAGCCACGUUCACAGGGCGGU----CA--GGGAGAUGCCAUCGCUCUCGGUUCAGGAGGUCUGGGCUU ((((.((..((((..((..((((.(((.(((((......((.(((.(.......)))))).----.)--))))..)))....))))..))..))))..))...)))). ( -33.90) >DroSim_CAF1 8332 108 - 1 GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCCCGAUCCCAGGGUGGAGCAUCGGGAGGAGAUGCCAUUGCCUUGGGCUCGGGCGGCCUGGGCUU ((((......(((((((((...)))))))))...........((((.((.(((((((..(.(((((.......)))))..)..))))))).))))))))))....... ( -55.80) >DroEre_CAF1 8637 108 - 1 GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUGGCCAUCCAGCCCAGAUCCCAGGGCGGAGCACUGGGCGGAGAUGCCAUUGCCUUGGGAUCGGGUGGCCUGGGCUU (((((.....(((((((((...))))))))).)))))....((((((((((((((((((.....)..((((....))))...)))))))))))((....)))))))). ( -59.70) >DroYak_CAF1 8413 108 - 1 GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCGAGAUCCCAGGGUGGAGCACUGGGCGGAGAUGCCAUUGCCCUGGGAUCGGGUGGCCUGGGCUU ((((......(((((((((...)))))))))(..(((((((......((((((((((..(.......((((....)))).)..)))))))))))))))))..))))). ( -57.20) >DroPer_CAF1 10064 102 - 1 GGCCAAUUCCUUGCUCCUUGAGCAGCAGUCCCUUUCUAUCCAGCCACGUUCACAGGGCGGU----CA--GGGAGAUGCCAUCGCUCUCGGUUCAGGAGGUCUGGGCUU ((((.((..((((..((..((((.(((.(((((......((.(((.(.......)))))).----.)--))))..)))....))))..))..))))..))...)))). ( -34.80) >consensus GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCCAGAUCCCAGGGCGGAGCA_CGGGAGGAGAUGCCAUUGCCCUGGGAUCGGGAGGCCUGGGCUU (((.......(((((((....)))))))......))).(((((((..((.((((((((((.....)....((.....))..))))))))).))....)).)))))... (-31.29 = -31.32 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:38 2006