Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 400,531 – 400,651 |
Length | 120 |
Max. P | 0.613969 |
Location | 400,531 – 400,651 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.44 |
Mean single sequence MFE | -45.35 |
Consensus MFE | -20.97 |
Energy contribution | -20.50 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.43 |
Mean z-score | -2.48 |
Structure conservation index | 0.46 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 400531 120 - 22407834 GACCGCAAUCACAGCCUUCUCAAAGAGGUGGAGAUGGCCAAUGAGGAGCUGGCGAAGCUCCGGGAGGAGUGCGGCGAGCACAAGUUUGAGAAGCGUCUGCUUAGUGAGCAAGUGGGUGCA ....(((..(((.(((((((((((..(((.......)))........(((.((...(((((....)))))...)).))).....))))))))).)).(((((...))))).)))..))). ( -44.60) >DroVir_CAF1 42126 120 - 1 GAGCGCAAUCAAGAGCUGCUCAAGGAGCUGGAAACAGCCAACCAGCAGCUGGCCAAGUUGCGCGACGAGUGUGCCGAACACAAGUUCGAGAAGCGGGCGCUCAAGGACCAAGUGGGCGCA ..((((...(...(((((((....(.((((....)))))....)))))))((((..(((....)))((((((.((((((....)))))......).))))))..)).))..)...)))). ( -48.50) >DroPse_CAF1 37561 120 - 1 GAACGCAAUCAGACGUUGCUCAAAGAAGUGGAAACAGCCAACGAGGAGCUGUCCAAGCUACGCGAGGAAUGCGGCGAGCUAAAGUACGAGAAGCGAGUGCUCAACGAGCAGGUGGGAGCC ...(((..((..((...((((.......((....))(((.....(((....)))..((..(....)....)))))))))....))..))...)))..(((((...)))))(((....))) ( -33.00) >DroGri_CAF1 42098 120 - 1 GAGCGCAAUCAAAUGCUGCUCAAGGAGCUGGAAACAGCCAACGAUGAGCUGGCCAAGUUGCGUGAGGAGUGCAACGAGCACAAGUACGAGAAGCGUGCGCUCAAGGAGCAAGUGAGCGCA ..((((..(((..(((((((((.(..((((....))))...)..)))))...((..((((((.......))))))((((....(((((.....)))))))))..))))))..))))))). ( -48.40) >DroYak_CAF1 16437 120 - 1 GAGCGCAAUCACGGCCUCCUCAAGGAGGUGGAGCUGGCCAAUGAGGAGCUGGCGAAGCUCCGGGAGGAGUGUAGCGAGCACAAGUACGAGAAGCGUCUGCUCAGCGAGCAAGUGGGUGCA ....(((..(((.((((((....))))))...(((.((...((((..(((.((...(((((....)))))...)).)))...((.(((.....))))).)))))).)))..)))..))). ( -52.30) >DroMoj_CAF1 20130 120 - 1 GAACGAAAUCAAUUGCUGCUCAAGGAGCUGGAAACAGCCAACGAUGAGCUGGCCAAGGUGCGCGAGGAGUGCGCCGAGCACAAGUACGAGAAACGUGCCCUCAAGGAGCAAGUGGGCGCA ...((...(((.(((((.((..(((.(((((...((((((....)).)))).))..(((((((.....))))))).)))....(((((.....))))))))..)).))))).))).)).. ( -45.30) >consensus GAGCGCAAUCAAAGGCUGCUCAAGGAGCUGGAAACAGCCAACGAGGAGCUGGCCAAGCUGCGCGAGGAGUGCGGCGAGCACAAGUACGAGAAGCGUGCGCUCAAGGAGCAAGUGGGCGCA ...(((..((....((.((((...))))(((...(((((......).)))).)))......)).....((((.....))))......))...))).(((((((.........))))))). (-20.97 = -20.50 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:59 2006