Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,472,226 – 3,472,343 |
Length | 117 |
Max. P | 0.706205 |
Location | 3,472,226 – 3,472,343 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -25.81 |
Consensus MFE | -18.89 |
Energy contribution | -19.32 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.71 |
Structure conservation index | 0.73 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3472226 117 + 22407834 AAGGUUCUGGCCAAUAAAAUCUGCGAUAAAAACCAACUGGAACAGCAGUGGAAAGUUGGGCGAAAUGCGCCAUAUGAUCCACAAAGGGAGCCUCAUUAAUAUGUAUAGCACAGCAAU .(((((((.............(((........((....))....)))(((((..((..((((.....))))..))..)))))....)))))))........(((........))).. ( -25.20) >DroSec_CAF1 5931 114 + 1 AAAGUUCUGGCUAAUAAAAUCUGCGAUAAAAACCAACUGAAACAGCAAUGGAAAGUUGGGCGAAAUGCGCCAUAUGAUCCACAAAGGGAACCUAAUUAAAAUGUAUAGCAC---AAU .......((((((.........(((.......((((((....((....))...))))))........))).......(((......)))................)))).)---).. ( -20.96) >DroSim_CAF1 5421 114 + 1 AAGGUUCUGGCCAAUAAAAUCUGCGAUAAAAACCAACUGAAACAGCAAUGGAAAGUUGGGCGAAACGCGCCAUAUGAUCCACAAAGGGAGCCUAAUUAAAAUGUAUAGCAC---AAU .((((((((((.....................((((((....((....))...))))))(((...)))))))......((.....))))))))..................---... ( -26.20) >DroEre_CAF1 5999 98 + 1 AAGGUUCUGGCCAAUAAAAUCUGCGAUAGAAAUCAACUUGAGCAGCAGUGGAAAGUGGGGCUAAGUGCCCCCUAUGAUCCACAAAGGGAGCCCAGUUA------------------- ..((((((............((((...((.......))...))))..(((((.((.(((((.....)))))))....)))))....))))))......------------------- ( -30.90) >consensus AAGGUUCUGGCCAAUAAAAUCUGCGAUAAAAACCAACUGAAACAGCAAUGGAAAGUUGGGCGAAAUGCGCCAUAUGAUCCACAAAGGGAGCCUAAUUAAAAUGUAUAGCAC___AAU .(((((((.............(((....................)))(((((..(((((((.....)).))).))..)))))....)))))))........................ (-18.89 = -19.32 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:32 2006