Locus 1317

Sequence ID 2L_DroMel_CAF1
Location 3,469,059 – 3,469,179
Length 120
Max. P 0.647238
window2156

overview

Window 6

Location 3,469,059 – 3,469,179
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.61
Mean single sequence MFE -53.12
Consensus MFE -31.10
Energy contribution -31.77
Covariance contribution 0.67
Combinations/Pair 1.39
Mean z-score -1.67
Structure conservation index 0.59
SVM decision value 0.24
SVM RNA-class probability 0.647238
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3469059 120 - 22407834
UCAUCUCAGCCCUGCCGCCCGAUGGAACGGUGGCCACGGCCUCCACGGGAGUGGCAGCCUGCCUGAUCGGUGGGACCACCUUGCACGCCUUCGCUGGCAUAGGAGGAGGAGACGCCACCA
(((((...((......))..)))))...((((((.....(((((.((((.((((...((..((.....))..)).))))))))...(((......)))...))))).(....))))))). ( -50.70)
>DroVir_CAF1 4599 120 - 1
UCAUCUCGGCGCUGCCGCCGGAAGGCACCGUGGCCACGGCAUCCACGGGCGUGGCCGCCUGCCUAAUUGGCGGCACGACCUUGCACGCAUUUGCCGGAAUUGGCGGCGGCGAUGCCACGG
.......((((.((((((((.((((...((((((((((.(.......).)))))))(((.(((.....))))))))).)))).)........((((....))))))))))).)))).... ( -60.70)
>DroGri_CAF1 5988 120 - 1
UUAUCUCGGCGUUGCCGCCGGACGGCACUGUGGCCACCGCAUCGACGGGCGUUGCUGCUUGCCUCAUUGGCGGCACCACGUUGCAUGCGUUUGCUGGUAUUGGUGGCGGCGAUGCCACCA
.......((((((((((((....)))......(((((((((((((((((...(((((((.........))))))))).))))).))))(....).......))))))))))))))).... ( -57.10)
>DroWil_CAF1 4777 120 - 1
UAAUAUCAGCUUUGCCGCCCGAUGGAACAGUGGCAACGGCAUCGACCGGUGUGGCCGCUUGUCUGAUUGGUGGCACAACAUUGCAUGCUUUUGCUGGAAUUGGAGGUGGAGAUGCCACUU
((((.(((((..(((((((.((((((..((((((....(((((....))))).))))))..))).)))))))))).......(....)....))))).)))).((((((.....)))))) ( -40.30)
>DroMoj_CAF1 3879 120 - 1
UCAUCUCGGCGCUGCCGCCAGAUGGCACCGUGGCCACUGCAUCAACAGGCGUGGCCGCUUGCCUCAUAGGUGGUACCACGCUGCACGCCUUUGCUGGCAUAGCUGGCGGCGAUGGCACCU
.......((.(((((((((((........((((((((.((........)))))))))).((((.((.((((((((......))).))))).))..))))...))))))))...))).)). ( -56.50)
>DroAna_CAF1 3093 120 - 1
UUAUAUCUGCUCUUCCUCCCGAAGGAACUAUAGCCACGGCCUCCACGGGUGUGGCGGCUUGUCUAAUUGGUGGCACCACUCUGCACGCCUUUGCGGGCAUUGGCGGCGGAGAUGCCACCA
........(((.(((((.....))))).....((((((.((.....)).))))))))).........((((((((...((((((.((((..((....))..)))))))))).)))))))) ( -53.40)
>consensus
UCAUCUCGGCGCUGCCGCCCGAUGGAACCGUGGCCACGGCAUCCACGGGCGUGGCCGCUUGCCUAAUUGGUGGCACCACCUUGCACGCCUUUGCUGGCAUUGGAGGCGGAGAUGCCACCA
.........((((((((((....)))...((((((((.((........)))))))))).((((.....(((((((......))).))))......)))).....)))))))......... (-31.10 = -31.77 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:31 2006