Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,462,617 – 3,462,717 |
Length | 100 |
Max. P | 0.822931 |
Location | 3,462,617 – 3,462,717 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.80 |
Mean single sequence MFE | -24.24 |
Consensus MFE | -19.12 |
Energy contribution | -18.16 |
Covariance contribution | -0.96 |
Combinations/Pair | 1.36 |
Mean z-score | -1.47 |
Structure conservation index | 0.79 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3462617 100 + 22407834 UACAAAAA----------------UCAGAUUGUAGAAUGCUCCUAAAAGAUAUUUGGGAGUUGAUUUGAGUGGAAGUUGUUUGAGUGGGGGAAUAUAUAGCAUAACGAAACCACAA ........----------------((((((((......(((((((((.....)))))))))))))))))((((..((((((((.(((......))).))).)))))....)))).. ( -22.00) >DroSec_CAF1 5219 95 + 1 ------------------AAAUCCUCAGGUUGUAGAAUGCUCCUAAAAGAUAUUUGGGAGUUGAUUUAAGUGGAAGUUGCGUAUGUG---GAAUAUGUACCGCAACGUAACCAUAU ------------------...(((.(......((((..(((((((((.....)))))))))...)))).).))).(((((((.((((---(........))))))))))))..... ( -26.50) >DroSim_CAF1 5222 113 + 1 UACAAGAAG---UCUAAGAAAUCCUCAGGUUGUAGAAUGCUCCUAAAAGAUAUUUGGGAGUUGAUUUGAGUGGAAGUUGCUUAAGUGGGGGAAUAUGUACCGCAACGAAACCAUAU ..((((...---((((...((((....)))).))))..(((((((((.....)))))))))...)))).((((..(((((....(((.(......).))).)))))....)))).. ( -24.30) >DroEre_CAF1 5195 113 + 1 UAGAAAAUG---UCUGGGAAAUCCUCAGGAUGUAGAAUGCUCCUAAAAGAUACUUAGGAGCUGAUUUGAGUGGAAGUUGCUUGAGUAGACGAAUAUAUAACACAACGAAACCAUGA .........---((((((.....))))))(((((....((((((((.......))))))))..(((..((..(...)..))..))).......))))).................. ( -23.70) >DroYak_CAF1 5256 116 + 1 UACAGAAAGGGAAGUGGGAAAUCCUCAGGAUGUAGAAUGCUCCUAAAAGAUAUUUGGGAGUUCAUUUGAGUGGAAGUUGCUUGGGUAGAGGGAUAUAUAACACAACGAAACCAUAA .............((((....(((((........((..(((((((((.....)))))))))))(((..((..(...)..))..))).)))))........(.....)...)))).. ( -24.70) >consensus UACAAAAAG_____U__GAAAUCCUCAGGUUGUAGAAUGCUCCUAAAAGAUAUUUGGGAGUUGAUUUGAGUGGAAGUUGCUUGAGUGGAGGAAUAUAUAACACAACGAAACCAUAA ................................((((..(((((((((.....)))))))))...)))).((((..((((((((.(((......))).))).)))))....)))).. (-19.12 = -18.16 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:30 2006