Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,459,501 – 3,459,609 |
Length | 108 |
Max. P | 0.722559 |
Location | 3,459,501 – 3,459,609 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.66 |
Mean single sequence MFE | -39.13 |
Consensus MFE | -23.58 |
Energy contribution | -23.42 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.38 |
Mean z-score | -1.70 |
Structure conservation index | 0.60 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3459501 108 - 22407834 CAUAGUUGGCCAGGCAACAGAGCAUGCGCUGCUCCCAGGUCACAGCCGCUGCUCCGCCGCUUCCAGCCACCGAAUCUGGCUGCUGGGCAUUGGGGAAUCCAAGUAGCU ....((.((((.(....).(((((.....)))))...))))))....(((((...(((.(...((((((.......))))))..)))).((((.....))))))))). ( -37.60) >DroVir_CAF1 2107 105 - 1 CAUAGUUGGCCAGGCAGCAGAGCAUGCGCUGUUCCCAGUUAACAGCUGCGCCUCCAA---CACCGGACACCGACUCCGGUUGCUGGGCAUUUGGAAAUCCGAGCAGCU ....((((((..((.(((((.(....).)))))))..))))))((((((((((....---.((((((.......))))))....))))..((((....)))))))))) ( -41.60) >DroPse_CAF1 2116 102 - 1 CAUAAUUGGCCAGGCAACAGAGCAUACGCUGCUCCCAGGUGAC---CGCUGCUCCACCACU---GGCUACAGAGUCCAGCUGCUGGGCAUUGGGAAAGCCCAACAGCU ......(((((((......(((((.....)))))...((((..---........)))).))---)))))........(((((.(((((.........))))).))))) ( -37.20) >DroWil_CAF1 11193 105 - 1 CAUAGUUGGCCAGACAACAGAGCAUACGCUGCUCCCAAGUGACAGCGG---CUCCUCCACUGUGGGCCACCGAAUCCGGUUGUUGGGCAUUGGGAAAGCCUAGCAACU ....(.(((((..(((...(((....(((((.((......))))))).---...)))...))).))))).)......(((((((((((.........))))))))))) ( -37.50) >DroAna_CAF1 2090 105 - 1 CAAAGUUGGCCAAACAGCAGAGCAUGCGCUGCUCCCAGGUGACUGUG---GCUCCAGCUCCCCCGGCCACCGAAUCCGGCUGCUGGGCAUUCGGAAAUCCCAGUAGCU ....(.(((((.....(((.....)))((((..(((((....))).)---)...))))......))))).)......((((((((((.(((....))))))))))))) ( -43.70) >DroPer_CAF1 2117 102 - 1 CAUAAUUGGCCAGGCAACAGAGCAUACGCUGCUCCCAGGUGAC---CGCUGCUCCACCACU---GGCUACAGAGUCCAGCUGCUGGGCAUUGGGAAAGCCCAACAGCU ......(((((((......(((((.....)))))...((((..---........)))).))---)))))........(((((.(((((.........))))).))))) ( -37.20) >consensus CAUAGUUGGCCAGGCAACAGAGCAUACGCUGCUCCCAGGUGACAGCCGCUGCUCCACCACU_CCGGCCACCGAAUCCGGCUGCUGGGCAUUGGGAAAGCCCAGCAGCU ......(((((.(....).(((((.....)))))..............................)))))........((((((((((...........)))))))))) (-23.58 = -23.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:29 2006