Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,448,275 – 3,448,388 |
Length | 113 |
Max. P | 0.500000 |
Location | 3,448,275 – 3,448,388 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -37.42 |
Consensus MFE | -25.10 |
Energy contribution | -25.85 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.12 |
Mean z-score | -1.52 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3448275 113 - 22407834 GGGCUAGGGGGUACAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAACGGGCAUUAACUAGAGUCACUUAAUUAUCCAGGUUGUUCACCAGCUAAGCGCGU------- (.(((.(((((((.(((((.(((((....(((((....((((....)))).)))))...))))).....(....))))))....))))).(((.....)))..)).))).)..------- ( -35.60) >DroSec_CAF1 15186 118 - 1 GGGCGAGGAGCCACAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAAUGGGCAUUACCCAGUGUCACUUAAUU--CCAGGUGGUUCACCAGCUAAGCGCGCUUGUUUG (.(((...(((....(((((((((((...(((((...)))))..(((((((.(((((...((......))))))))))))))...--))))))..)))))..)))...))).)....... ( -43.80) >DroEre_CAF1 14443 107 - 1 GGACAAAGGGGUAAAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAAUGGGACUUACUUAG------UGAAUUAUCUAGGUGGUUCAACAGCUAAGCGUUU------- ....................((.((((..(((((...)))))((((((((((..((....))..)))))))))------)(((((((....)))))))....)))).))....------- ( -31.60) >DroYak_CAF1 2373 113 - 1 GGGCGAGGGGGUAAAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAACGGGAAUUACUUAGAGUCAAUUAAUUAUCUAGGUGGUUCACCAGCUAAGCGCUU------- .((((...((((..((((..((..(((..(((((...))))))))..))...))))..))((((((((((((((............)))))))))))).))..))...)))).------- ( -38.70) >consensus GGGCGAGGGGGUAAAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAACGGGAAUUACCUAGAGUCACUUAAUUAUCCAGGUGGUUCACCAGCUAAGCGCGU_______ ..(((....(((...(((((((((((...(((((...))))).((((((((...((....))...))))))))..............))))))..)))))..)))...)))......... (-25.10 = -25.85 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:26 2006