Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,443,248 – 3,443,347 |
Length | 99 |
Max. P | 0.767751 |
Location | 3,443,248 – 3,443,347 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 74.00 |
Mean single sequence MFE | -23.43 |
Consensus MFE | -16.22 |
Energy contribution | -17.00 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.11 |
Mean z-score | -1.37 |
Structure conservation index | 0.69 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3443248 99 - 22407834 GGGCGAGCGUGUGAAUGAAAAAUAAAUAUGUGCGAUAGAACGGAUAGAAAGUCUGCUUUCGAAUAGGAGUUUUAUUAUAUACUCUUGCAGAUUAAGUCG-------------------- ..(((((.((((((((((((......(((...(((.((..(((((.....))))))).))).)))....))))))).))))).)))))...........-------------------- ( -22.40) >DroSim_CAF1 32325 119 - 1 GAGCGAGCGUGUGAAUGAAAAAUAAAUAUGUGCGAUAAAACGGAUAGAAAGUCUGCUUUCGUAAAGAAGUUUUAUUAUAUACUCUUGCAGUUUAAACUGACCGGUACAAACUUUUUAAA ..(((((.((((((((((((..........(((((.....(((((.....)))))...)))))......))))))).))))).)))))(((((..(((....)))..)))))....... ( -25.39) >DroYak_CAF1 34671 109 - 1 AGACGAGCGUGUGAAUGAAAAAUAAAUAUGUGCAAUAAAAUGGAUGGAAAGUCUGCUUUCGCCAAGGAGUUUU---AUAUGCUCUUCCAAAUGAAACUGGACUCAACAAAUU------- ....(((((((((((...........(((.....)))...(((...(((((....))))).)))......)))---)))))))).((((........))))...........------- ( -22.50) >consensus GGGCGAGCGUGUGAAUGAAAAAUAAAUAUGUGCGAUAAAACGGAUAGAAAGUCUGCUUUCGAAAAGGAGUUUUAUUAUAUACUCUUGCAGAUUAAACUG__C___ACAAA_U_______ ..(((((.((((((((((((........(((.((......)).)))(((((....))))).........))))))).))))).)))))............................... (-16.22 = -17.00 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:20 2006