Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,442,166 – 3,442,286 |
Length | 120 |
Max. P | 0.957435 |
Location | 3,442,166 – 3,442,286 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.42 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -15.51 |
Energy contribution | -15.83 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.07 |
Mean z-score | -1.71 |
Structure conservation index | 0.63 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3442166 120 - 22407834 UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGACGAUGCAUUGUACCCGCCAGCCCCAGGCCCCACUCCCUAACCCCCCACCCCCCCCCCCUCCCUGGCCAGUAUAUUUUAACCAAC ..(((((((.....)))))))(((.(.((.....)).).)))..(((((..(((((....(((.............................)))..)))))..)))))........... ( -23.75) >DroAna_CAF1 35619 92 - 1 UAGGUGCGGUCGUUUCGCAUCGCGACUUCAACACGAUGAUGCAUUGUGCCG-C---CCCCAUGCCCGCC------------------------UUUUUUCGCUCUAUCGUUUUGGCCAAG ..((.(((((......((((((((.........)).)))))).....))))-)---))........(((------------------------......((......))....))).... ( -21.00) >DroSim_CAF1 31286 95 - 1 UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGAUGAUGCAUUGUACCCGCCAGCC--A-GCCCCCCUC-------------C---------CCCCUGGCCAGUAUAUUUUAACCAAC ..(((((((.....)))))))(((.((((.....)))).)))..(((((..(((((..--.-.........-------------.---------...)))))..)))))........... ( -26.99) >DroYak_CAF1 33579 102 - 1 UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGAUGAUGCAUUGUGCCCAACAGCC--A-GCC---------AACCUCC------CCCUCCCCCCCUGGCCAUUAUAUUUUAACCAAC ..(((..(((((((.((((..(((.((((.....)))).)))..))))...)))))))--.-(((---------(......------...........))))............)))... ( -27.33) >consensus UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGAUGAUGCAUUGUACCCGCCAGCC__A_GCCCCCC________________________CCCCCUGGCCAGUAUAUUUUAACCAAC ..(((((((.....)))))))(((.((((.....)))).))).............................................................................. (-15.51 = -15.83 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:19 2006